Miyakogusa Predicted Gene

Lj0g3v0326609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326609.1 tr|Q8W105|Q8W105_ARATH At1g50840/F8A12_8
OS=Arabidopsis thaliana GN=At1g50840 PE=2 SV=1,81.48,2e-19,no
description,NULL; DNA/RNA polymerases,NULL; DNA POLYMERASE
I,NULL,CUFF.22220.1
         (57 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g45910.1                                                       109   7e-25
Glyma14g02860.1                                                       108   1e-24
Glyma0364s00210.1                                                     102   1e-22
Glyma02g25220.1                                                        97   5e-21

>Glyma02g45910.1 
          Length = 1077

 Score =  109 bits (272), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 52/54 (96%), Positives = 52/54 (96%)

Query: 4    QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
            QVHDEVILEGPTESAEVAKSIVVECMSKPF GKNIL VDLSVDAKCAQNWYSGK
Sbjct: 1024 QVHDEVILEGPTESAEVAKSIVVECMSKPFNGKNILKVDLSVDAKCAQNWYSGK 1077


>Glyma14g02860.1 
          Length = 917

 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/54 (94%), Positives = 52/54 (96%)

Query: 4   QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
           QVHDEVILEGPTESAEVAKSIV+ECMSKPF GKNIL VDLSVDAKCAQNWYSGK
Sbjct: 864 QVHDEVILEGPTESAEVAKSIVIECMSKPFNGKNILKVDLSVDAKCAQNWYSGK 917


>Glyma0364s00210.1 
          Length = 52

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/51 (94%), Positives = 49/51 (96%)

Query: 4  QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWY 54
          QVHDEVILEGPTESAEVAKSIV+ECMSKPF GKNIL VDLSVDAKCAQNWY
Sbjct: 1  QVHDEVILEGPTESAEVAKSIVIECMSKPFNGKNILKVDLSVDAKCAQNWY 51


>Glyma02g25220.1 
          Length = 174

 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 48/54 (88%)

Query: 4   QVHDEVILEGPTESAEVAKSIVVECMSKPFYGKNILNVDLSVDAKCAQNWYSGK 57
           QVHDEVILEGPTESAEVAK+IVVECM+KPF G+N L V LSVDA CAQNWY+ K
Sbjct: 121 QVHDEVILEGPTESAEVAKAIVVECMTKPFNGENFLRVGLSVDANCAQNWYAAK 174