Miyakogusa Predicted Gene

Lj0g3v0326459.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0326459.1 tr|G7I853|G7I853_MEDTR Cyclin-H1-1 OS=Medicago
truncatula GN=MTR_1g083060 PE=3 SV=1,53.85,0.00000000003,
,CUFF.22197.1
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g37850.1                                                       128   2e-30

>Glyma20g37850.1 
          Length = 121

 Score =  128 bits (321), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/120 (58%), Positives = 83/120 (69%), Gaps = 11/120 (9%)

Query: 1   MACLLSTTFTIPL-----PMVLLNKGVHH--LDSAVVTPSNKTAICTAQKSLGSCNSNKL 53
           MA L+S+TFT+PL     P+    +GVH   L   +    +K  I  AQK LG+C+SNK 
Sbjct: 1   MAFLVSSTFTLPLRVRASPLNKNKQGVHQHQLYYPLDRFLSKATIPAAQKILGTCSSNKR 60

Query: 54  VLSVKGCCQHCLMS----LDETFCNDLDVDCCTEIVISGYWVGPDADDGWGFVEAVINQM 109
           +LS+KG C  CLMS    L ET+  +LDVD CTEIVISGYWVGPDADDGWGFVEAVINQM
Sbjct: 61  ILSMKGSCHRCLMSCTIFLHETYSYNLDVDYCTEIVISGYWVGPDADDGWGFVEAVINQM 120