Miyakogusa Predicted Gene

Lj0g3v0322979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0322979.1 Non Chatacterized Hit- tr|K3Y967|K3Y967_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si010731,83.33,0.000007,seg,NULL; coiled-coil,NULL,CUFF.21923.1
         (192 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g35330.1                                                        54   1e-07
Glyma12g35180.1                                                        50   1e-06

>Glyma13g35330.1 
          Length = 380

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%), Gaps = 5/52 (9%)

Query: 3  DRNGNGALPNKAAASLEKPEGDDAPSRIDSRKARENSDVDSETERKHSNSRR 54
          D N NGA+   A     + + D+APSR DSRK+RENSDVDSE +RKH+NSRR
Sbjct: 4  DANRNGAMSKNA-----ENDEDEAPSRRDSRKSRENSDVDSEFDRKHNNSRR 50


>Glyma12g35180.1 
          Length = 378

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 35/52 (67%), Gaps = 7/52 (13%)

Query: 3  DRNGNGALPNKAAASLEKPEGDDAPSRIDSRKARENSDVDSETERKHSNSRR 54
          D N NG+ P       E  + D+AP+R  SRK+RENSDVDSE +RKH NSRR
Sbjct: 4  DENANGSQP-------ESDDDDEAPARRYSRKSRENSDVDSEPDRKHINSRR 48