Miyakogusa Predicted Gene

Lj0g3v0321439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0321439.1 tr|B9INU2|B9INU2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_574572 PE=4
SV=1,32.57,0.00000000002,seg,NULL,CUFF.21792.1
         (244 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g11270.1                                                       102   5e-22
Glyma06g45580.1                                                       101   8e-22

>Glyma12g11270.1 
          Length = 254

 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/210 (36%), Positives = 101/210 (48%), Gaps = 16/210 (7%)

Query: 1   MKSVSKNKFLTCFRPVVDIDAMTMLDSGPA--LDRSATRHITDKHDT-RNSSTKSIFSDP 57
           M+S SKNKFL CFRPVVDID M   +  P     R  T   ++ H+  +NS TKS++   
Sbjct: 1   MRSFSKNKFLLCFRPVVDIDCMIKSEVAPTCRFPRIPT---SENHNVMKNSETKSVYFPH 57

Query: 58  KSVEDRVVRQPSKRAFAKVIKAVVFETILNTRARNKKLYSQSCFGSRR-SYSAHADSSST 116
            S          KR  ++VIKAV +ETILN R  +K  Y    FG +  +Y       S 
Sbjct: 58  VS---------QKRRISRVIKAVFYETILNRRDHHKNRYIHDSFGPKYLTYGETKTLQSP 108

Query: 117 GNGKSTMSLVSLDSNIKEIKTMEXXXXXXXXXXXRVSEDESCEDQLEKQNKCLLQGICMI 176
            +  S+   ++  S+     +             +  E       LEKQ K    GI +I
Sbjct: 109 LSTSSSSHGLASPSSSSRTSSQPKNVSSYYSTKEKRKEGGHGGGPLEKQTKFECFGIYLI 168

Query: 177 LISLAVTVLWGKIDVIILTSMLFCICSVWN 206
           LISLA TV WGK+  IILTS L    +VW+
Sbjct: 169 LISLAFTVFWGKLFGIILTSTLLYFFAVWD 198


>Glyma06g45580.1 
          Length = 229

 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 102/217 (47%), Gaps = 24/217 (11%)

Query: 1   MKSVSKNKFLTCFRPVVDIDAMTMLDSGPALDRSATRHI-----TDKHDT-RNSSTKSIF 54
           M+S SKNKFL CFRPVVDID M   +  P   RS+T        ++ H+  +NS TKS++
Sbjct: 1   MRSFSKNKFLLCFRPVVDIDCMIKSEVAP--HRSSTCRFPRIPSSENHNVMKNSETKSVY 58

Query: 55  SDPKSVEDRVVRQPSKRAFAKVIKAVVFETILNTRARNKKLYSQSCFGSRRSYSAHADSS 114
               S          KR  ++VIKAV +ETILN R  +K  Y    FG +  Y ++   +
Sbjct: 59  FPHLS---------PKRRISRVIKAVFYETILNRRDHHKNRYIHDSFGPK--YLSYGGET 107

Query: 115 ST-----GNGKSTMSLVSLDSNIKEIKTMEXXXXXXXXXXXRVSEDESCEDQLEKQNKCL 169
            T         S+  L S   +                   +  E       LEKQ K  
Sbjct: 108 KTLQSPLSTSSSSHGLASPSLSSHASSFQSKNVSSYYSTKEKRKEGTGHGGPLEKQKKFE 167

Query: 170 LQGICMILISLAVTVLWGKIDVIILTSMLFCICSVWN 206
             GI +ILISLA TV WGK+  IILTS L    +VW+
Sbjct: 168 CLGIYLILISLAFTVFWGKLFGIILTSTLLYFFAVWD 204