Miyakogusa Predicted Gene

Lj0g3v0320179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0320179.1 Non Chatacterized Hit- tr|I3S7E3|I3S7E3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.05,0,COP9
SIGNALOSOME COMPLEX SUBUNIT 6,NULL; EUKARYOTIC TRANSLATION INITIATION
FACTOR 3 SUBUNIT F-RELATE,CUFF.21698.1
         (317 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g12890.1                                                       572   e-163
Glyma06g47850.1                                                       568   e-162
Glyma11g34980.1                                                        90   4e-18
Glyma18g03360.1                                                        87   3e-17
Glyma02g42210.1                                                        53   5e-07
Glyma18g03340.1                                                        52   6e-07
Glyma14g06690.1                                                        50   3e-06
Glyma11g35020.1                                                        49   8e-06

>Glyma04g12890.1 
          Length = 318

 Score =  572 bits (1473), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/318 (89%), Positives = 291/318 (91%), Gaps = 1/318 (0%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGA-DGVVSSVPPRVY 59
           MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPT AP ++  +    DGVVS + PRVY
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTHAPPHNNNNANGGDGVVSPLSPRVY 60

Query: 60  GCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDA 119
           GCVIGVQKGRTVEIFNSFELLYDPS+HSLDR FLEKKQELYKKVFPHFYILGWYSTGSDA
Sbjct: 61  GCVIGVQKGRTVEIFNSFELLYDPSSHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDA 120

Query: 120 EESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT 179
           EESDM+IH+ALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT
Sbjct: 121 EESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYT 180

Query: 180 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKG 239
           IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKG
Sbjct: 181 IETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKG 240

Query: 240 DVPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDK 299
           DVPCEN             PAIESGKFQDDFLM YNDTLLISYL MLTNCSSAMNELVDK
Sbjct: 241 DVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNELVDK 300

Query: 300 FNTAYDRHSRRGGRTAFM 317
           FN AYDRHSRRGGRTAFM
Sbjct: 301 FNIAYDRHSRRGGRTAFM 318


>Glyma06g47850.1 
          Length = 322

 Score =  568 bits (1464), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/322 (88%), Positives = 292/322 (90%), Gaps = 5/322 (1%)

Query: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAP----HNSVPSNGADGVVSS-VP 55
           MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPT AP     N+  +NG DGVVS  + 
Sbjct: 1   MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTHAPPHTTTNNNNANGGDGVVSPPLH 60

Query: 56  PRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYST 115
           PRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDR FLEKKQELYKKVFPHFYILGWYST
Sbjct: 61  PRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRTFLEKKQELYKKVFPHFYILGWYST 120

Query: 116 GSDAEESDMNIHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVR 175
           GSDAEESDM+IH+ALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVR
Sbjct: 121 GSDAEESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVR 180

Query: 176 SSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLA 235
           SSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTG HSAIKMLHSRIKVLHHYLLA
Sbjct: 181 SSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGTHSAIKMLHSRIKVLHHYLLA 240

Query: 236 MQKGDVPCENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNE 295
           MQKGDVPCEN             PAIESGKFQDDFLM YNDT+LISYL MLTNCSS+MNE
Sbjct: 241 MQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTVLISYLAMLTNCSSSMNE 300

Query: 296 LVDKFNTAYDRHSRRGGRTAFM 317
           LVDKFN AYDRHSRRGGRTAFM
Sbjct: 301 LVDKFNIAYDRHSRRGGRTAFM 322


>Glyma11g34980.1 
          Length = 309

 Score = 89.7 bits (221), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 136/305 (44%), Gaps = 39/305 (12%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I D+Y RV                            RV G ++G     TV+
Sbjct: 19  VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           + NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG    E+D++IH
Sbjct: 57  VTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIP---QLIFVRSSYTIETVE 184
               D   +PV V+++  +   +  +P   + +   V +      Q +FV     I   E
Sbjct: 117 GLFNDYVPNPVLVIID--VEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHE 174

Query: 185 AERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPC 243
            E I V+H+   +K +   + AT+++A LT    A+K L +R+K +  YL  +  G +P 
Sbjct: 175 VEEIGVEHLLRDVKDTTISTLATEVSAKLT----ALKGLDARLKEIRSYLDLVIDGKLPL 230

Query: 244 ENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDK--FN 301
            +             P +        F +  ND +L+ YL+ L     A++ L++    N
Sbjct: 231 NHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLN 290

Query: 302 TAYDR 306
             ++R
Sbjct: 291 KEHER 295


>Glyma18g03360.1 
          Length = 309

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/305 (24%), Positives = 135/305 (44%), Gaps = 39/305 (12%)

Query: 13  LHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIGVQKGRTVE 72
           +HPLV+++I D+Y RV                            RV G ++G     TV+
Sbjct: 19  VHPLVLLSIVDNYNRVAKDTRK----------------------RVVGVLLGSSFKGTVD 56

Query: 73  IFNSFELLY-----DPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIH 127
           + NS+ + +     DPS   LD  + E    ++K++    +++GWYSTG    E+D++IH
Sbjct: 57  VTNSYAVPFEEDDKDPSIWFLDHNYHESMFSMFKRINAKEHVVGWYSTGPKLRENDLDIH 116

Query: 128 RALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIP---QLIFVRSSYTIETVE 184
                   +PV V+++  +   +  +P   + +   V +      Q +FV     I   E
Sbjct: 117 GLFNGYVPNPVLVIID--VEPKELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHE 174

Query: 185 AERISVDHVAH-LKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPC 243
            E I V+H+   +K +   + AT+++A LT    A+K L +R+K +  YL  +  G +P 
Sbjct: 175 VEEIGVEHLLRDVKDTTISTLATEVSAKLT----ALKGLDARLKEIRGYLDLVIDGKLPL 230

Query: 244 ENXXXXXXXXXXXXXPAIESGKFQDDFLMGYNDTLLISYLTMLTNCSSAMNELVDK--FN 301
            +             P +        F +  ND +L+ YL+ L     A++ L++    N
Sbjct: 231 NHEILYHLQDVFNLLPNLNVADLIKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLN 290

Query: 302 TAYDR 306
             ++R
Sbjct: 291 KEHER 295


>Glyma02g42210.1 
          Length = 284

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 122/301 (40%), Gaps = 49/301 (16%)

Query: 12  KLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIG-VQKGRT 70
           K+HPLV+ NI D Y R   Q                         RV G ++G +    T
Sbjct: 20  KVHPLVVFNICDCYVRRPDQAE-----------------------RVIGTLLGSILPNGT 56

Query: 71  VEIFNSFELLYDPSTHSLDRPFLEKKQE-----LYKKVFPHFYILGWYSTGSDAEESDMN 125
           V++ NS+ +   P + S+D+  L+ + +      ++KV P   I+GWYSTG         
Sbjct: 57  VDVRNSYAV---PHSESVDQVALDIEYQHSMLLSHQKVNPKEVIVGWYSTGLGVTGGSAL 113

Query: 126 IHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEA 185
           IH        +P+++ ++         +   +  + L + D      F      +  VEA
Sbjct: 114 IHEFYSREVPNPIHLTVDTGFTKGACTIKAYVSHN-LSLGDRQIAAQFQEIPLDLRMVEA 172

Query: 186 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCEN 245
           ERI  D +         +A  ++ + L G+ +++  L + I  +H Y+  + +G +  +N
Sbjct: 173 ERIGFDTLK-------ATAVNKIPSDLEGMEASMGHLLALIDDIHKYVDDVVEGRIDPDN 225

Query: 246 XXXXXXXXXXXXXPAIESGKFQ---DDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNT 302
                        P + S  F+   +D L  +   L +S +T  T  S     L +K NT
Sbjct: 226 KIGRFISDAVGSIPKLPSSAFEKLVNDSLQDHLLLLYLSSITR-TQLS-----LAEKLNT 279

Query: 303 A 303
           A
Sbjct: 280 A 280


>Glyma18g03340.1 
          Length = 289

 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 34/240 (14%)

Query: 9   LTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIG-VQK 67
           L+ K+HPLVI NI D Y R   Q +                       RV G ++G V  
Sbjct: 22  LSAKVHPLVIFNICDCYVRRPDQAD-----------------------RVIGTLLGSVLP 58

Query: 68  GRTVEIFNSFELLYDPSTH--SLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMN 125
             TV+I NS+ + ++ S    +LD  +       ++KV P   I+GWYSTG         
Sbjct: 59  DGTVDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSAL 118

Query: 126 IHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEA 185
           IH        +P+++ ++    +    +   +  + L + +      F      +  VEA
Sbjct: 119 IHEFYSREVPNPIHLTVDTGFTNGAGTIKAYV-SNNLSLGERQIAAQFQEIPLDLRMVEA 177

Query: 186 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCEN 245
           ERI VD +         +A  ++ + L G+ ++++ L   I  ++ Y+  + +G V  +N
Sbjct: 178 ERIGVDMLK-------ATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVDDVVEGRVAPDN 230


>Glyma14g06690.1 
          Length = 289

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 120/301 (39%), Gaps = 49/301 (16%)

Query: 12  KLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIG-VQKGRT 70
           K+HPLV+ NI D Y R   Q                         RV G ++G +    T
Sbjct: 25  KVHPLVVFNICDCYVRRLDQAE-----------------------RVIGTLLGSILPDGT 61

Query: 71  VEIFNSFELLYDPSTHSLDRPFLEKKQE-----LYKKVFPHFYILGWYSTGSDAEESDMN 125
           V++ NS+ +   P + S+D+  L+ +        ++KV P   I+GWYSTG         
Sbjct: 62  VDVRNSYAV---PHSESVDQVALDIEYHHSMLLSHQKVNPKEVIVGWYSTGLGVTGGSAL 118

Query: 126 IHRALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEA 185
           IH        +P+++ ++         +   +  + L + D      F      +  VEA
Sbjct: 119 IHEFYSREVPNPIHLTIDTGFTKGAGTIKAYVSHN-LSLGDHQIAAQFQEIPLDLRMVEA 177

Query: 186 ERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCEN 245
           ERI  D +         +A  ++ + L G+ + +  L + I  +H Y+  + +G +  +N
Sbjct: 178 ERIGFDTLK-------ATAVDKIPSDLEGMEALMGHLLALIDDIHKYVDDVVEGRIDPDN 230

Query: 246 XXXXXXXXXXXXXPAIESGKFQ---DDFLMGYNDTLLISYLTMLTNCSSAMNELVDKFNT 302
                        P + S  F+   +D L  +   L +S +T  T  S     L +K NT
Sbjct: 231 KIGRFISDAVGSIPKLPSSAFEKLVNDSLQDHLLLLYLSSITR-TQLS-----LAEKLNT 284

Query: 303 A 303
           A
Sbjct: 285 A 285


>Glyma11g35020.1 
          Length = 288

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 99/237 (41%), Gaps = 34/237 (14%)

Query: 12  KLHPLVIVNISDHYTRVKSQMNPTLAPHNSVPSNGADGVVSSVPPRVYGCVIG-VQKGRT 70
           K+HPLVI NI D Y R   Q +                       RV G ++G V    T
Sbjct: 24  KVHPLVIFNICDCYVRRPDQAD-----------------------RVIGTLLGSVLPDGT 60

Query: 71  VEIFNSFELLYDPSTH--SLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAEESDMNIHR 128
           V+I NS+ + ++ S    +LD  +       ++KV P   I+GWYSTG         IH 
Sbjct: 61  VDIRNSYAVPHNESIEQVALDIEYHHNMLISHQKVNPKEIIVGWYSTGLGVTGGSALIHE 120

Query: 129 ALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGIPQLIFVRSSYTIETVEAERI 188
                  +P+++ ++    +    +   +  + L + +      F      +  VEAERI
Sbjct: 121 FYSREVPNPIHLTVDTGFTNGAGTIKAYV-SNNLSLGERQIAAQFQEIPLDLRMVEAERI 179

Query: 189 SVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCEN 245
             D +         +A  ++ + L G+ ++++ L   I  ++ Y+  + +G V  +N
Sbjct: 180 GFDMLK-------ATAVDKIPSDLEGMEASMQHLLVLIDDIYKYVNDVVEGLVAPDN 229