Miyakogusa Predicted Gene
- Lj0g3v0319629.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0319629.1 tr|A9SAQ5|A9SAQ5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_163856,53.77,6e-19,UBIQUITIN_2,Ubiquitin supergroup;
Ubiquitin-like,NULL; no description,NULL; Rad60-SLD,Small
ubiquiti,CUFF.21656.1
(108 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g46500.2 120 3e-28
Glyma18g35450.1 118 2e-27
Glyma08g46500.1 113 5e-26
Glyma08g43290.1 110 5e-25
Glyma08g43290.2 82 1e-16
Glyma08g11770.3 54 5e-08
Glyma08g11770.2 54 5e-08
Glyma08g11770.1 54 5e-08
>Glyma08g46500.2
Length = 103
Score = 120 bits (301), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/103 (64%), Positives = 79/103 (76%), Gaps = 5/103 (4%)
Query: 5 SASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHY 64
SASG RGSQ++ EKKP ++QG+ HIN+KV G Q+ E FRIKR+ QL+ LMN YCD
Sbjct: 2 SASGGRGSQEE--EKKP-SDQGA-HINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQ 56
Query: 65 SQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
S DFNSIAFL++G + A QTPDEL+MED DEIDAM HQ GGG
Sbjct: 57 SVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 99
>Glyma18g35450.1
Length = 114
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/103 (63%), Positives = 78/103 (75%), Gaps = 5/103 (4%)
Query: 5 SASGERGSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHY 64
S SG RGSQ++ EKKP ++QG+ HIN+KV G Q+ E FRIKR+ QL+ LMN YCD
Sbjct: 2 SVSGGRGSQEE--EKKP-SDQGA-HINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQ 56
Query: 65 SQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
S DFNSIAFL++G + A QTPDEL+MED DEIDAM HQ GGG
Sbjct: 57 SVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 99
>Glyma08g46500.1
Length = 117
Score = 113 bits (282), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 78/116 (67%), Gaps = 17/116 (14%)
Query: 5 SASGERGSQDQDQEKKPATNQGSSHINIKVNG-------------VQEKIEARFRIKRNV 51
SASG RGSQ++ EKKP ++QG+ HIN+KV G + E FRIKR+
Sbjct: 2 SASGGRGSQEE--EKKP-SDQGA-HINLKVKGQVSILYSPFPLLNFMDGNEVFFRIKRST 57
Query: 52 QLRTLMNLYCDHYSQDFNSIAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
QL+ LMN YCD S DFNSIAFL++G + A QTPDEL+MED DEIDAM HQ GGG
Sbjct: 58 QLKKLMNAYCDRQSVDFNSIAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGGG 113
>Glyma08g43290.1
Length = 99
Score = 110 bits (274), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query: 11 GSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNS 70
G + ++E K T QG+ HIN+KV G Q+ E FRIKR+ QL+ LMN YCD S DFNS
Sbjct: 3 GVTNNNEEDKKPTEQGA-HINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNS 60
Query: 71 IAFLYEGNLVSAYQTPDELKMEDEDEIDAMSHQMGG 106
IAFL++G + A QTPDEL+MED DEIDAM HQ GG
Sbjct: 61 IAFLFDGRRLRAEQTPDELEMEDGDEIDAMLHQTGG 96
>Glyma08g43290.2
Length = 86
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 11 GSQDQDQEKKPATNQGSSHINIKVNGVQEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNS 70
G + ++E K T QG+ HIN+KV G Q+ E FRIKR+ QL+ LMN YCD S DFNS
Sbjct: 3 GVTNNNEEDKKPTEQGA-HINLKVKG-QDGNEVFFRIKRSTQLKKLMNAYCDRQSVDFNS 60
Query: 71 IAFLYEGNLVSAYQTPDEL 89
IAFL++G + A QTPDE+
Sbjct: 61 IAFLFDGRRLRAEQTPDEV 79
>Glyma08g11770.3
Length = 106
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 17 QEKKPATNQGSSHINIKVNGV-QEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLY 75
+ K P N+ + +I I + + Q+ F++ N++L + +C+ + ++ ++ FL
Sbjct: 10 KRKSPDDNEATDNIQINFSIIDQDGRHMYFKVNHNLELIKVFKDFCERKNLEYETMQFLC 69
Query: 76 EGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
+G + TP L MED+ EI A +HQ+GGG
Sbjct: 70 DGIHIKGKHTPKMLNMEDDAEIFAATHQVGGG 101
>Glyma08g11770.2
Length = 106
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 17 QEKKPATNQGSSHINIKVNGV-QEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLY 75
+ K P N+ + +I I + + Q+ F++ N++L + +C+ + ++ ++ FL
Sbjct: 10 KRKSPDDNEATDNIQINFSIIDQDGRHMYFKVNHNLELIKVFKDFCERKNLEYETMQFLC 69
Query: 76 EGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
+G + TP L MED+ EI A +HQ+GGG
Sbjct: 70 DGIHIKGKHTPKMLNMEDDAEIFAATHQVGGG 101
>Glyma08g11770.1
Length = 106
Score = 53.5 bits (127), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 17 QEKKPATNQGSSHINIKVNGV-QEKIEARFRIKRNVQLRTLMNLYCDHYSQDFNSIAFLY 75
+ K P N+ + +I I + + Q+ F++ N++L + +C+ + ++ ++ FL
Sbjct: 10 KRKSPDDNEATDNIQINFSIIDQDGRHMYFKVNHNLELIKVFKDFCERKNLEYETMQFLC 69
Query: 76 EGNLVSAYQTPDELKMEDEDEIDAMSHQMGGG 107
+G + TP L MED+ EI A +HQ+GGG
Sbjct: 70 DGIHIKGKHTPKMLNMEDDAEIFAATHQVGGG 101