Miyakogusa Predicted Gene

Lj0g3v0319359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0319359.1 Non Chatacterized Hit- tr|K3XLM0|K3XLM0_SETIT
Uncharacterized protein OS=Setaria italica GN=Si002793,32.35,3e-19,no
description,Trigger factor, ribosome-binding, bacterial;
Trigger_N,Trigger factor, ribosome-bindi,CUFF.21642.1
         (202 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma04g13160.3                                                       286   1e-77
Glyma04g13160.1                                                       286   1e-77
Glyma04g13160.2                                                       270   8e-73
Glyma04g13160.5                                                       196   1e-50
Glyma04g13160.4                                                       194   6e-50
Glyma12g05280.2                                                        87   1e-17
Glyma12g05280.1                                                        84   9e-17
Glyma01g09470.1                                                        71   6e-13

>Glyma04g13160.3 
          Length = 204

 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 158/204 (77%), Gaps = 2/204 (0%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQ-AYLPA 59
           M   SQ FILN TPQ+A CKQRV E I+PSLN R FGLSWKLRHGAR IL+RE    LP 
Sbjct: 1   MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPT 60

Query: 60  A-VISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A V+SDA++SS  FEDFSVSVADNND  ELKIS+EVSGNKTQ IFDDVF+KMVAAAQPIP
Sbjct: 61  ADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIP 120

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQR 178
           GFRRVKGGKTPDIPK ILLEVLGPSKV+ EVIKKIINSTVAEYVEKE LIV  DLRVEQ 
Sbjct: 121 GFRRVKGGKTPDIPKNILLEVLGPSKVFNEVIKKIINSTVAEYVEKECLIVSKDLRVEQS 180

Query: 179 XXXXXXXXXXXXXXXXDVVLHPQK 202
                           DVVL  QK
Sbjct: 181 FEDLETTFEEGEKFSFDVVLELQK 204


>Glyma04g13160.1 
          Length = 204

 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/204 (73%), Positives = 158/204 (77%), Gaps = 2/204 (0%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQ-AYLPA 59
           M   SQ FILN TPQ+A CKQRV E I+PSLN R FGLSWKLRHGAR IL+RE    LP 
Sbjct: 1   MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPT 60

Query: 60  A-VISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A V+SDA++SS  FEDFSVSVADNND  ELKIS+EVSGNKTQ IFDDVF+KMVAAAQPIP
Sbjct: 61  ADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIP 120

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQR 178
           GFRRVKGGKTPDIPK ILLEVLGPSKV+ EVIKKIINSTVAEYVEKE LIV  DLRVEQ 
Sbjct: 121 GFRRVKGGKTPDIPKNILLEVLGPSKVFNEVIKKIINSTVAEYVEKECLIVSKDLRVEQS 180

Query: 179 XXXXXXXXXXXXXXXXDVVLHPQK 202
                           DVVL  QK
Sbjct: 181 FEDLETTFEEGEKFSFDVVLELQK 204


>Glyma04g13160.2 
          Length = 198

 Score =  270 bits (690), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 145/204 (71%), Positives = 153/204 (75%), Gaps = 8/204 (3%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQ-AYLPA 59
           M   SQ FILN TPQ      RV E I+PSLN R FGLSWKLRHGAR IL+RE    LP 
Sbjct: 1   MNAASQTFILNLTPQ------RVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPT 54

Query: 60  A-VISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A V+SDA++SS  FEDFSVSVADNND  ELKIS+EVSGNKTQ IFDDVF+KMVAAAQPIP
Sbjct: 55  ADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIP 114

Query: 119 GFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQR 178
           GFRRVKGGKTPDIPK ILLEVLGPSKV+ EVIKKIINSTVAEYVEKE LIV  DLRVEQ 
Sbjct: 115 GFRRVKGGKTPDIPKNILLEVLGPSKVFNEVIKKIINSTVAEYVEKECLIVSKDLRVEQS 174

Query: 179 XXXXXXXXXXXXXXXXDVVLHPQK 202
                           DVVL  QK
Sbjct: 175 FEDLETTFEEGEKFSFDVVLELQK 198


>Glyma04g13160.5 
          Length = 134

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 106/128 (82%), Gaps = 2/128 (1%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQ-AYLPA 59
           M   SQ FILN TPQ+A CKQRV E I+PSLN R FGLSWKLRHGAR IL+RE    LP 
Sbjct: 1   MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPT 60

Query: 60  A-VISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A V+SDA++SS  FEDFSVSVADNND  ELKIS+EVSGNKTQ IFDDVF+KMVAAAQPIP
Sbjct: 61  ADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIP 120

Query: 119 GFRRVKGG 126
           GFRRVKGG
Sbjct: 121 GFRRVKGG 128


>Glyma04g13160.4 
          Length = 144

 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 97/127 (76%), Positives = 105/127 (82%), Gaps = 2/127 (1%)

Query: 1   MQTISQIFILNPTPQMARCKQRVDELILPSLNYRRFGLSWKLRHGARKILKREQ-AYLPA 59
           M   SQ FILN TPQ+A CKQRV E I+PSLN R FGLSWKLRHGAR IL+RE    LP 
Sbjct: 1   MNAASQTFILNLTPQVATCKQRVHEFIVPSLNCRHFGLSWKLRHGARNILRREYIKCLPT 60

Query: 60  A-VISDARVSSTDFEDFSVSVADNNDVRELKISIEVSGNKTQSIFDDVFRKMVAAAQPIP 118
           A V+SDA++SS  FEDFSVSVADNND  ELKIS+EVSGNKTQ IFDDVF+KMVAAAQPIP
Sbjct: 61  ADVLSDAQISSDQFEDFSVSVADNNDSSELKISVEVSGNKTQRIFDDVFKKMVAAAQPIP 120

Query: 119 GFRRVKG 125
           GFRRVKG
Sbjct: 121 GFRRVKG 127


>Glyma12g05280.2 
          Length = 226

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/117 (38%), Positives = 76/117 (64%), Gaps = 6/117 (5%)

Query: 59  AAVISDARVSSTDFEDFSVSVA------DNNDVRELKISIEVSGNKTQSIFDDVFRKMVA 112
           +A+ S    S TD  D S  +A      D+ D  ++++ ++++G++TQ +FD +   +  
Sbjct: 75  SALNSGLEASITDSNDISAILANAKIVVDSEDENKIQLRVDLTGDQTQKVFDRILTNLGR 134

Query: 113 AAQPIPGFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIV 169
            A P+PGFR  KGGK+  IPK+ L+++LG  +V K  I++I+NST+A+YV+KE+L V
Sbjct: 135 TAPPVPGFRMQKGGKSSKIPKDFLVQMLGEERVTKFSIQEILNSTMADYVKKENLDV 191


>Glyma12g05280.1 
          Length = 238

 Score = 84.0 bits (206), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 6/114 (5%)

Query: 59  AAVISDARVSSTDFEDFSVSVA------DNNDVRELKISIEVSGNKTQSIFDDVFRKMVA 112
           +A+ S    S TD  D S  +A      D+ D  ++++ ++++G++TQ +FD +   +  
Sbjct: 75  SALNSGLEASITDSNDISAILANAKIVVDSEDENKIQLRVDLTGDQTQKVFDRILTNLGR 134

Query: 113 AAQPIPGFRRVKGGKTPDIPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKES 166
            A P+PGFR  KGGK+  IPK+ L+++LG  +V K  I++I+NST+A+YV+K S
Sbjct: 135 TAPPVPGFRMQKGGKSSKIPKDFLVQMLGEERVTKFSIQEILNSTMADYVKKAS 188


>Glyma01g09470.1 
          Length = 84

 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 40/47 (85%), Gaps = 1/47 (2%)

Query: 131 IPKEILLEVLGPSKVYKEVIKKIINSTVAEYVEKESLIVGTDLRVEQ 177
           IPK ILLEVLGPSKV+KEVIKKIINS V EYVEK  LI+  DLRVEQ
Sbjct: 14  IPKNILLEVLGPSKVFKEVIKKIINSIVVEYVEK-CLIISKDLRVEQ 59