Miyakogusa Predicted Gene

Lj0g3v0318429.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318429.1 Non Chatacterized Hit- tr|D7M307|D7M307_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,63.38,3e-18,UNCHARACTERIZED,Vesicle transport protein,
SFT2-like; Got1,Vesicle transport protein,
Got1/SFT2-like,gene.g24779.t1.1
         (72 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g33260.1                                                       145   1e-35
Glyma09g28470.1                                                       144   3e-35
Glyma19g16660.1                                                        87   5e-18
Glyma19g16660.2                                                        53   6e-08

>Glyma16g33260.1 
          Length = 178

 Score =  145 bits (366), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/72 (98%), Positives = 71/72 (98%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MMLDPVRIYATAIYIASMIIALFCALYVHNKLLT LAIILEFGALVWYSLSYIPFARSMV
Sbjct: 107 MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTFLAIILEFGALVWYSLSYIPFARSMV 166

Query: 61  SKIMVSCFDTEF 72
           SKIMVSCFDTEF
Sbjct: 167 SKIMVSCFDTEF 178


>Glyma09g28470.1 
          Length = 178

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 70/72 (97%), Positives = 71/72 (98%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MMLDP RIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFAR+MV
Sbjct: 107 MMLDPARIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARAMV 166

Query: 61  SKIMVSCFDTEF 72
           SKIMVSCFDTEF
Sbjct: 167 SKIMVSCFDTEF 178


>Glyma19g16660.1 
          Length = 161

 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 63/72 (87%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLTLLAIILEFGALVWYSLSYIPFARSMV 60
           MM+DPVR++ATAIY+  ++IAL CAL++H+K+LT++AII+E GAL+WYSLSYIPFAR MV
Sbjct: 90  MMVDPVRVFATAIYLGCVVIALICALWIHSKVLTIIAIIIEIGALIWYSLSYIPFARRMV 149

Query: 61  SKIMVSCFDTEF 72
           S++M+   DTE 
Sbjct: 150 SELMIRLCDTEL 161


>Glyma19g16660.2 
          Length = 136

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/34 (61%), Positives = 31/34 (91%)

Query: 1   MMLDPVRIYATAIYIASMIIALFCALYVHNKLLT 34
           MM+DPVR++ATAIY+  ++IAL CAL++H+K+LT
Sbjct: 90  MMVDPVRVFATAIYLGCVVIALICALWIHSKVLT 123