Miyakogusa Predicted Gene

Lj0g3v0318179.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0318179.1 Non Chatacterized Hit- tr|K3XMI8|K3XMI8_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si002916,35.67,5e-18,zf-HIT,Zinc finger, HIT-type; ZF_HIT,Zinc
finger, HIT-type; SUBFAMILY NOT NAMED,NULL; THYROID
RECEPT,CUFF.21528.1
         (132 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g19260.1                                                       224   3e-59
Glyma10g04900.1                                                       222   9e-59
Glyma13g19260.2                                                       124   3e-29

>Glyma13g19260.1 
          Length = 132

 Score =  224 bits (570), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 112/132 (84%), Positives = 116/132 (87%)

Query: 1   MGPRQCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKPPSSEVKTSAALESPVKKP 60
           MGPRQCQVCN  QSKYKC SCYLPYCSLVCFKKHKESPCVKP  SE K +A  ES V+KP
Sbjct: 1   MGPRQCQVCNQTQSKYKCPSCYLPYCSLVCFKKHKESPCVKPQPSETKATAVSESFVEKP 60

Query: 61  IVIDEPIEVLQKFQLEAIASSSEIRDALNDQALQELICRIDCSPNAENEFDKAMAEEAFR 120
           +V DE  EVLQKFQLEAIASSSEIRDALND+ALQELICRID S NAENE DKAMAEEAFR
Sbjct: 61  LVADESSEVLQKFQLEAIASSSEIRDALNDEALQELICRIDGSSNAENELDKAMAEEAFR 120

Query: 121 LFTDKILSTINP 132
           LFTDKILSTINP
Sbjct: 121 LFTDKILSTINP 132


>Glyma10g04900.1 
          Length = 132

 Score =  222 bits (565), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 110/132 (83%), Positives = 116/132 (87%)

Query: 1   MGPRQCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKPPSSEVKTSAALESPVKKP 60
           MGPRQCQVCN  QSKYKC SCYLPYCSLVCFKKHKE PCVKP  SE KT+A  ES  +KP
Sbjct: 1   MGPRQCQVCNEAQSKYKCPSCYLPYCSLVCFKKHKELPCVKPQPSEAKTTAVSESIAEKP 60

Query: 61  IVIDEPIEVLQKFQLEAIASSSEIRDALNDQALQELICRIDCSPNAENEFDKAMAEEAFR 120
           +V+DE  EVL+KFQLEAIASSSEIRDALND+ALQELICRIDCS NAENE DKAMAEEAFR
Sbjct: 61  LVVDESSEVLEKFQLEAIASSSEIRDALNDKALQELICRIDCSSNAENELDKAMAEEAFR 120

Query: 121 LFTDKILSTINP 132
           L TDKILSTINP
Sbjct: 121 LLTDKILSTINP 132


>Glyma13g19260.2 
          Length = 102

 Score =  124 bits (311), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/79 (78%), Positives = 65/79 (82%)

Query: 1  MGPRQCQVCNLVQSKYKCASCYLPYCSLVCFKKHKESPCVKPPSSEVKTSAALESPVKKP 60
          MGPRQCQVCN  QSKYKC SCYLPYCSLVCFKKHKESPCVKP  SE K +A  ES V+KP
Sbjct: 1  MGPRQCQVCNQTQSKYKCPSCYLPYCSLVCFKKHKESPCVKPQPSETKATAVSESFVEKP 60

Query: 61 IVIDEPIEVLQKFQLEAIA 79
          +V DE  EVLQKFQLEAI 
Sbjct: 61 LVADESSEVLQKFQLEAIG 79