Miyakogusa Predicted Gene

Lj0g3v0317529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0317529.1 tr|Q109L1|Q109L1_ORYSJ PsbP family protein,
expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os10g32,39.78,3e-19,PsbP,Photosystem II PsbP, oxygen evolving
complex; no description,Mog1/PsbP, alpha/beta/alpha
sandwi,CUFF.21478.1
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g43690.1                                                       169   7e-43
Glyma20g38370.1                                                       169   9e-43
Glyma20g23100.1                                                       168   1e-42
Glyma18g52340.1                                                        99   1e-21
Glyma02g10540.1                                                        96   7e-21

>Glyma10g43690.1 
          Length = 234

 Score =  169 bits (427), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 87/96 (90%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
           +GP+EEVV +LVKH+Y+ P Q  TI DMQEK IDGKHYYTFEY+LTSPN+SSASF T+AI
Sbjct: 139 LGPMEEVVYDLVKHRYAAPNQRPTINDMQEKTIDGKHYYTFEYILTSPNYSSASFATIAI 198

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNGRYYTLIVGANERRWKR R+QLKVVADSFRLLDI
Sbjct: 199 GNGRYYTLIVGANERRWKRFRDQLKVVADSFRLLDI 234


>Glyma20g38370.1 
          Length = 231

 Score =  169 bits (427), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 78/96 (81%), Positives = 86/96 (89%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
           +GP+EEV+ NLVKH Y+ P Q  TI DMQEK IDGKHYYTFEY+LTSPN+SSASF T+AI
Sbjct: 136 LGPMEEVIYNLVKHIYAAPNQRPTIKDMQEKTIDGKHYYTFEYILTSPNYSSASFATIAI 195

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNGRYYTLIVGANERRWKR R+QLKVVADSFRLLDI
Sbjct: 196 GNGRYYTLIVGANERRWKRFRDQLKVVADSFRLLDI 231


>Glyma20g23100.1 
          Length = 234

 Score =  168 bits (426), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 77/96 (80%), Positives = 87/96 (90%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
           +GP+EEV+ +LVKH+Y+ P Q  TI DMQEK IDGKHYYTFEY+LTSPN+SSASF T+AI
Sbjct: 139 LGPMEEVIYDLVKHRYAAPNQRPTINDMQEKTIDGKHYYTFEYILTSPNYSSASFATIAI 198

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNGRYYTLIVGANERRWKR R+QLKVVADSFRLLDI
Sbjct: 199 GNGRYYTLIVGANERRWKRFRDQLKVVADSFRLLDI 234


>Glyma18g52340.1 
          Length = 235

 Score = 98.6 bits (244), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 68/96 (70%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
            G  +EV   L+K   + P Q + I + +E++++GK YY FE++  +PN++  + +TV+I
Sbjct: 140 FGSPQEVAETLIKKVLAPPNQKTKIVEAKEEDVEGKKYYQFEFIAKAPNYTRHALSTVSI 199

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNG++YTL  GANERRW +++++L+ V +SF++ D+
Sbjct: 200 GNGKFYTLTTGANERRWDKMKDRLQTVIESFKIFDV 235


>Glyma02g10540.1 
          Length = 248

 Score = 96.3 bits (238), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 67/96 (69%)

Query: 1   MGPIEEVVPNLVKHKYSTPTQISTIYDMQEKNIDGKHYYTFEYVLTSPNFSSASFTTVAI 60
            G  +EV   L+K   + P Q + I + +E +++GK YY FE++  +PN++  + +TV+I
Sbjct: 153 FGSPQEVAETLIKKVLAPPNQKTKIVEAKELDVEGKKYYQFEFIAQAPNYTRHALSTVSI 212

Query: 61  GNGRYYTLIVGANERRWKRVRNQLKVVADSFRLLDI 96
           GNG++YTL  GANERRW +++++L+ V +SF++ D+
Sbjct: 213 GNGKFYTLTTGANERRWVKMKDRLQTVIESFKIFDV 248