Miyakogusa Predicted Gene

Lj0g3v0316659.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316659.3 Non Chatacterized Hit- tr|D7SS16|D7SS16_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,72.27,0,RNA
PSEUDOURIDYLATE SYNTHASE FAMILY PROTEIN,NULL; Pseudouridine
synthase,Pseudouridine synthase, cat,CUFF.21412.3
         (383 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma17g35030.1                                                       494   e-140
Glyma01g45530.1                                                       211   1e-54
Glyma14g10470.1                                                       124   1e-28
Glyma04g02320.1                                                        55   9e-08

>Glyma17g35030.1 
          Length = 361

 Score =  494 bits (1273), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 236/271 (87%), Positives = 252/271 (92%), Gaps = 4/271 (1%)

Query: 113 AADSFTQKDERMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEI 172
           A DS TQK+E+MKPMRK+RPN+VMK GAR+HVPVS+ ETRISKRYDAIPSGTLYPNADEI
Sbjct: 3   ADDSSTQKEEQMKPMRKIRPNEVMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEI 62

Query: 173 KYLQRLVIYKDSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKE 232
           KYLQRL    DSAIIVLNKPPKLPVKG+LPVHNSMD       SYDYDEGPKLVHRLD+E
Sbjct: 63  KYLQRL----DSAIIVLNKPPKLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRE 118

Query: 233 SSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGII 292
           SSGILL GRTKDSVSHLQWLFSNIN+AKSSCK WN+ACEATYQRYWALVIGTP EKEGII
Sbjct: 119 SSGILLLGRTKDSVSHLQWLFSNINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGII 178

Query: 293 HAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQL 352
           HAPLSKVLLNDGKTER++LAHHS++EPRQEAVTEYRVLGP+INGCSWVELRPLT RKHQL
Sbjct: 179 HAPLSKVLLNDGKTERIILAHHSSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQL 238

Query: 353 RVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
           RVHCAEALGTPIVGDYKYGWFVH+RWKQMPR
Sbjct: 239 RVHCAEALGTPIVGDYKYGWFVHSRWKQMPR 269


>Glyma01g45530.1 
          Length = 420

 Score =  211 bits (537), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 104/256 (40%), Positives = 153/256 (59%), Gaps = 10/256 (3%)

Query: 123 RMKPMRKMRPNDVMKPGARLHVPVSMAETRISKRYDAIPSGTLYPNADEIKYLQRLVIYK 182
           + +  +++   D +  G R+ +P S+   +        P         +I +++ LVIYK
Sbjct: 84  QQQTFKRVAAKDTLNTGDRILLPQSVKVKQTPTHSHLTP--------QQINFIRTLVIYK 135

Query: 183 DSAIIVLNKPPKLPVKGNLPVHNSMDXXXXXXXSYDYDEGPKLVHRLDKESSGILLFGRT 242
           D AI+VLNKPP +PV+G + +  S+D       +Y Y + P+LVHRLD++ SGIL+ GRT
Sbjct: 136 DPAILVLNKPPGMPVQGGINIKRSLDAVAAASLNYGYSQPPRLVHRLDRDCSGILVMGRT 195

Query: 243 KDSVSHLQWLFSNINSAKSSCKAWNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLN 302
             S + L  +F    S  S             +RYWALV+G P   +G++ A L KV+++
Sbjct: 196 HTSTTVLHSIFREKTSRASD--DIGKEKRILQRRYWALVLGCPRRPKGLVTASLGKVVVD 253

Query: 303 DGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGT 362
           +G+++R+ +  +ST+   Q A+TEYRV+     G +W+EL PLT RKHQLRVHCAE LGT
Sbjct: 254 NGRSDRITIVDNSTLMSSQHAITEYRVIASSSQGYTWLELTPLTGRKHQLRVHCAEVLGT 313

Query: 363 PIVGDYKYGWFVHNRW 378
           PIVGDYKYGW  H +W
Sbjct: 314 PIVGDYKYGWQAHRKW 329


>Glyma14g10470.1 
          Length = 218

 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/105 (64%), Positives = 71/105 (67%), Gaps = 27/105 (25%)

Query: 279 ALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCS 338
           ALVIGTP EKEGIIHAPLSKVLLNDGKTE        T  P  E+V+ Y           
Sbjct: 55  ALVIGTPKEKEGIIHAPLSKVLLNDGKTE------DDTSSPF-ESVSTY----------- 96

Query: 339 WVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPR 383
                    RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQMPR
Sbjct: 97  ---------RKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPR 132


>Glyma04g02320.1 
          Length = 450

 Score = 55.5 bits (132), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 70/153 (45%), Gaps = 25/153 (16%)

Query: 223 PKLVHRLDKESSGILLFGRTKDSVSHLQWLFSNINSAKSSCKAWNDACEATYQR-YWALV 281
           P +VHRLDK +SG+L+    KD  SH+              K      + T +R Y +L 
Sbjct: 236 PGIVHRLDKGTSGLLVVA--KDEHSHM--------------KLSEQFKQRTIKRLYVSLT 279

Query: 282 IGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQE--AVTEYRVLGPKING-CS 338
            G P    G +  P+ +    D      M A    +  ++   A + Y+V+     G CS
Sbjct: 280 AGVPTPVAGRVEVPVGR----DTNNRIRMTAVTGPVNSKKARYAASRYKVIEILAGGSCS 335

Query: 339 WVELRPLTSRKHQLRVHCAEALGTPIVGDYKYG 371
            VE +  T R HQ+R H A+ LG P++GD  YG
Sbjct: 336 LVEWKLETGRTHQIRAH-AKYLGVPLLGDELYG 367