Miyakogusa Predicted Gene
- Lj0g3v0316659.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0316659.1 tr|D3BJX8|D3BJX8_POLPA Probable ribosomal large
subunit pseudouridine synthase C protein
OS=Polyspho,35.57,1e-18,PseudoU_synth_2,Pseudouridine synthase,
RsuA/RluB/C/D/E/F; RNA PSEUDOURIDYLATE SYNTHASE FAMILY
PROTE,CUFF.21412.1
(266 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g35030.1 406 e-113
Glyma14g10470.1 273 2e-73
Glyma01g45530.1 175 4e-44
>Glyma17g35030.1
Length = 361
Score = 406 bits (1044), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/210 (90%), Positives = 200/210 (95%)
Query: 57 WNDACEATYQRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVT 116
WN+ACEATYQRYWALVIGTP EKEGIIHAPLSKVLLNDGKTER++LAHHS++EPRQEAVT
Sbjct: 152 WNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEPRQEAVT 211
Query: 117 EYRVLGPKINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRVD 176
EYRVLGP+INGCSWVELRPLT RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQMPRVD
Sbjct: 212 EYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVD 271
Query: 177 IEPTTGKPYRMRRPEGLEVQKGSVLSKVPLLHLHCRELALPNISKFLHVFEKSPEELHPS 236
IEPTTGKPY++RRPEGL+VQKGSVLSKVPLLHLHCREL LPNI KF+HV S EEL S
Sbjct: 272 IEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSSEELRTS 331
Query: 237 LREQPDVLRFVATMPSHMRISWNLMSSYLV 266
LREQPDVLRFVATMPSHMRISWNLMSSYLV
Sbjct: 332 LREQPDVLRFVATMPSHMRISWNLMSSYLV 361
>Glyma14g10470.1
Length = 218
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/197 (73%), Positives = 150/197 (76%), Gaps = 33/197 (16%)
Query: 70 ALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKINGCS 129
ALVIGTP EKEGIIHAPLSKVLLNDGKTE T P E+V+ Y
Sbjct: 55 ALVIGTPKEKEGIIHAPLSKVLLNDGKTE------DDTSSPF-ESVSTY----------- 96
Query: 130 WVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPYRMRR 189
RKHQLRVHCAEALGTPIVGDYKYGWFVH+RWKQMPRVDIEPTTGK
Sbjct: 97 ---------RKHQLRVHCAEALGTPIVGDYKYGWFVHSRWKQMPRVDIEPTTGK------ 141
Query: 190 PEGLEVQKGSVLSKVPLLHLHCRELALPNISKFLHVFEKSPEELHPSLREQPDVLRFVAT 249
PEGL+VQKGSVLSKVPLLHLHCREL LPNI+KFLHV S EEL SLREQPDVLRFVAT
Sbjct: 142 PEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLNNSSEELRTSLREQPDVLRFVAT 201
Query: 250 MPSHMRISWNLMSSYLV 266
MPSHMRISWNLMSSYLV
Sbjct: 202 MPSHMRISWNLMSSYLV 218
>Glyma01g45530.1
Length = 420
Score = 175 bits (444), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 87/198 (43%), Positives = 127/198 (64%), Gaps = 5/198 (2%)
Query: 66 QRYWALVIGTPNEKEGIIHAPLSKVLLNDGKTERVMLAHHSTIEPRQEAVTEYRVLGPKI 125
+RYWALV+G P +G++ A L KV++++G+++R+ + +ST+ Q A+TEYRV+
Sbjct: 226 RRYWALVLGCPRRPKGLVTASLGKVVVDNGRSDRITIVDNSTLMSSQHAITEYRVIASSS 285
Query: 126 NGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHNRWKQMPRVDIEPTTGKPY 185
G +W+EL PLT RKHQLRVHCAE LGTPIVGDYKYGW H +W ++E + +
Sbjct: 286 QGYTWLELTPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGHFDLPNVEDSREELL 345
Query: 186 RMRR-PEGLEVQKGSVLSKVPLLHLHCRELALPNISKFLHVFEKSPEELHPSLREQPDVL 244
+ P GL + KGS+ P LHLHC+++ LPNIS+ L + S SL E+ L
Sbjct: 346 NEEKLPFGLNLNKGSISENHPRLHLHCKQMVLPNISQALQNVQ-SASSCDLSLVEE---L 401
Query: 245 RFVATMPSHMRISWNLMS 262
VA +P +M+ SW++ +
Sbjct: 402 ELVADLPPYMQRSWDVTN 419