Miyakogusa Predicted Gene

Lj0g3v0316139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0316139.1 Non Chatacterized Hit- tr|B9FL37|B9FL37_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,38.91,0.0000000005,seg,NULL; CSTF_C,Transcription termination
and cleavage factor C-terminal domain; CLEAVAGE
STIMULATI,NODE_9000_length_1337_cov_101.720268.path2.1
         (345 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma10g04650.1                                                       347   9e-96
Glyma08g04620.2                                                       334   8e-92
Glyma08g04620.1                                                       334   1e-91
Glyma05g35080.1                                                       311   9e-85
Glyma05g35080.3                                                       298   4e-81
Glyma05g35080.2                                                       298   5e-81
Glyma05g35080.4                                                       156   3e-38
Glyma13g18980.1                                                       133   3e-31

>Glyma10g04650.1 
          Length = 387

 Score =  347 bits (891), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 211/346 (60%), Positives = 222/346 (64%), Gaps = 9/346 (2%)

Query: 1   MLTKALFQAQIMLGXXXXXXXXXXXXXXX-XXXXXSVQSAXXXXXXXXXXXXGQGGAQDQ 59
           MLTKALFQAQIMLG                     SVQ              G GGAQDQ
Sbjct: 50  MLTKALFQAQIMLGMVQAPQTVPKVQPMVPQNNLQSVQPTQKPNIQPAPLLPGLGGAQDQ 109

Query: 60  AGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXX 119
           AGVSQTQIPLRKHQNQPSVPVS +A PA+SHQS PMA  SL MPQQPKGH          
Sbjct: 110 AGVSQTQIPLRKHQNQPSVPVS-SAVPALSHQSQPMAAQSLTMPQQPKGHLAPQVALASL 168

Query: 120 XXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSA 179
                  NI              TQM TASS LQ PL  PGFPHM             + 
Sbjct: 169 PQSSQLPNIPSPSLHSLSQPLHPTQMSTASSHLQHPLLTPGFPHMPLPPQIRQP----AM 224

Query: 180 SSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXXX 239
            +FHPQYPPQMG+NLGFQHAGASHNL QSMFHPG KPPASVGS F QG            
Sbjct: 225 PTFHPQYPPQMGANLGFQHAGASHNLSQSMFHPGTKPPASVGSTFPQGLPSQKSSQPP-- 282

Query: 240 XYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMGAANQP 299
            Y VGN+P G +FGNQ GNAMQVDR + +  G S+NLA LSGP GPP +VSGQMGAANQP
Sbjct: 283 -YQVGNVPSGPEFGNQAGNAMQVDRGASLMPGPSDNLAHLSGPPGPPYVVSGQMGAANQP 341

Query: 300 LRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           LRPP LTPDMEKALLQQVMSLTPEQIN LPPEQRNQVLQLQQMLRQ
Sbjct: 342 LRPPALTPDMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 387


>Glyma08g04620.2 
          Length = 344

 Score =  334 bits (857), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 207/347 (59%), Positives = 215/347 (61%), Gaps = 5/347 (1%)

Query: 1   MLTKALFQAQIMLGXXXXXXXXXXXXXXXXXXXXSVQSAXXXXXXXXXXXX-GQGGAQDQ 59
           MLTKALFQAQIMLG                                      G GGAQDQ
Sbjct: 1   MLTKALFQAQIMLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQ 60

Query: 60  AGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXX 119
           AGVSQTQIPLRKHQNQPSVPVS +A PA  HQS PMA HSL MPQ PKGH          
Sbjct: 61  AGVSQTQIPLRKHQNQPSVPVS-SAVPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSL 119

Query: 120 XXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSA 179
                  NI              TQM TASSQLQQP+Q  GF                + 
Sbjct: 120 PQSSQLPNIPPPSLQSSSQPLHPTQMATASSQLQQPMQTSGF--PPLQPPLPPQIRPTAL 177

Query: 180 SSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXXX 239
            +FHPQYPPQMG+N+GFQHAGASHNL QSMFHPG KP ASVGS F QG            
Sbjct: 178 PTFHPQYPPQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQP 237

Query: 240 XYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMG-AANQ 298
            Y VGNMP G DFGNQ GNAMQVDR S    G SENLA LSGP GPPS+VSGQMG AA Q
Sbjct: 238 PYQVGNMPLGPDFGNQAGNAMQVDRGSSWMLGPSENLAHLSGPPGPPSVVSGQMGAAAKQ 297

Query: 299 PLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           PLRPPGLTP+MEKALLQQVMSLTPEQIN LPPEQRNQVLQLQQMLRQ
Sbjct: 298 PLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 344


>Glyma08g04620.1 
          Length = 392

 Score =  334 bits (856), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 207/347 (59%), Positives = 215/347 (61%), Gaps = 5/347 (1%)

Query: 1   MLTKALFQAQIMLGXXXXXXXXXXXXXXXXXXXXSVQSAXXXXXXXXXXXX-GQGGAQDQ 59
           MLTKALFQAQIMLG                                      G GGAQDQ
Sbjct: 49  MLTKALFQAQIMLGMVQAPQVVPKVQPMVSQNNQQPVQPTQQPNIQPAPLLPGHGGAQDQ 108

Query: 60  AGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXX 119
           AGVSQTQIPLRKHQNQPSVPVS +A PA  HQS PMA HSL MPQ PKGH          
Sbjct: 109 AGVSQTQIPLRKHQNQPSVPVS-SAVPAARHQSQPMAAHSLPMPQHPKGHPTPQMALVSL 167

Query: 120 XXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSA 179
                  NI              TQM TASSQLQQP+Q  GF                + 
Sbjct: 168 PQSSQLPNIPPPSLQSSSQPLHPTQMATASSQLQQPMQTSGF--PPLQPPLPPQIRPTAL 225

Query: 180 SSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXXX 239
            +FHPQYPPQMG+N+GFQHAGASHNL QSMFHPG KP ASVGS F QG            
Sbjct: 226 PTFHPQYPPQMGANMGFQHAGASHNLPQSMFHPGTKPSASVGSTFPQGQTPLPGQPSSQP 285

Query: 240 XYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMG-AANQ 298
            Y VGNMP G DFGNQ GNAMQVDR S    G SENLA LSGP GPPS+VSGQMG AA Q
Sbjct: 286 PYQVGNMPLGPDFGNQAGNAMQVDRGSSWMLGPSENLAHLSGPPGPPSVVSGQMGAAAKQ 345

Query: 299 PLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           PLRPPGLTP+MEKALLQQVMSLTPEQIN LPPEQRNQVLQLQQMLRQ
Sbjct: 346 PLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 392


>Glyma05g35080.1 
          Length = 379

 Score =  311 bits (796), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 201/347 (57%), Positives = 210/347 (60%), Gaps = 19/347 (5%)

Query: 1   MLTKALFQAQIMLGXXXXXXXXXXXX-XXXXXXXXSVQSAXXXXXXXXXXXXGQGGAQDQ 59
           MLTKALFQAQIMLG                     SVQ              G GGAQDQ
Sbjct: 50  MLTKALFQAQIMLGMVQAPQVVSKVRPMVSQSNQQSVQLIQKPNIQPAPLLPGHGGAQDQ 109

Query: 60  AGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXX 119
           AGVSQTQIPLRKHQNQPSVP+S +A PAMSHQS PMA HSL MPQQ KGH          
Sbjct: 110 AGVSQTQIPLRKHQNQPSVPIS-SAVPAMSHQSQPMAAHSLPMPQQHKGHPTPQMAPVSL 168

Query: 120 XXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSA 179
                  N+              TQM TASSQLQQPLQ  GF                + 
Sbjct: 169 PQSSQLPNVPLPSLHQ-------TQMATASSQLQQPLQTSGF--PPLQPPLPPQIRPTAL 219

Query: 180 SSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGXXXXXXXXXXXX 239
            +FHPQYPPQ+G+N+GFQHAG SHNL QSM HPG KP ASVGS F QG            
Sbjct: 220 PTFHPQYPPQVGANMGFQHAGTSHNLPQSMIHPGTKPSASVGSTFPQGQTPLPGQPSSQP 279

Query: 240 XYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQM-GAANQ 298
            Y VGNMP G DFGNQ GNAMQVDR S    G SENLA LSGP        GQM  AANQ
Sbjct: 280 PYQVGNMPLGPDFGNQAGNAMQVDRGSSWLPGPSENLAHLSGP-------PGQMSAAANQ 332

Query: 299 PLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
            LRPPGLTP+MEKALLQQVMSLTPEQIN LPPEQRNQVLQLQQMLRQ
Sbjct: 333 LLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 379


>Glyma05g35080.3 
          Length = 319

 Score =  298 bits (764), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 184/295 (62%), Positives = 193/295 (65%), Gaps = 18/295 (6%)

Query: 52  GQGGAQDQAGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXX 111
           G GGAQDQAGVSQTQIPLRKHQNQPSVP+S +A PAMSHQS PMA HSL MPQQ KGH  
Sbjct: 42  GHGGAQDQAGVSQTQIPLRKHQNQPSVPIS-SAVPAMSHQSQPMAAHSLPMPQQHKGHPT 100

Query: 112 XXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXX 171
                          N+              TQM TASSQLQQPLQ  GF          
Sbjct: 101 PQMAPVSLPQSSQLPNVPLPSLHQ-------TQMATASSQLQQPLQTSGF--PPLQPPLP 151

Query: 172 XXXXXXSASSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGXXXX 231
                 +  +FHPQYPPQ+G+N+GFQHAG SHNL QSM HPG KP ASVGS F QG    
Sbjct: 152 PQIRPTALPTFHPQYPPQVGANMGFQHAGTSHNLPQSMIHPGTKPSASVGSTFPQGQTPL 211

Query: 232 XXXXXXXXXYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSG 291
                    Y VGNMP G DFGNQ GNAMQVDR S    G SENLA LSGP        G
Sbjct: 212 PGQPSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWLPGPSENLAHLSGP-------PG 264

Query: 292 QM-GAANQPLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           QM  AANQ LRPPGLTP+MEKALLQQVMSLTPEQIN LPPEQRNQVLQLQQMLRQ
Sbjct: 265 QMSAAANQLLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 319


>Glyma05g35080.2 
          Length = 303

 Score =  298 bits (763), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 184/295 (62%), Positives = 193/295 (65%), Gaps = 18/295 (6%)

Query: 52  GQGGAQDQAGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXX 111
           G GGAQDQAGVSQTQIPLRKHQNQPSVP+S +A PAMSHQS PMA HSL MPQQ KGH  
Sbjct: 26  GHGGAQDQAGVSQTQIPLRKHQNQPSVPIS-SAVPAMSHQSQPMAAHSLPMPQQHKGHPT 84

Query: 112 XXXXXXXXXXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXX 171
                          N+              TQM TASSQLQQPLQ  GF          
Sbjct: 85  PQMAPVSLPQSSQLPNVPLPSLHQ-------TQMATASSQLQQPLQTSGF--PPLQPPLP 135

Query: 172 XXXXXXSASSFHPQYPPQMGSNLGFQHAGASHNLQQSMFHPGAKPPASVGSAFTQGXXXX 231
                 +  +FHPQYPPQ+G+N+GFQHAG SHNL QSM HPG KP ASVGS F QG    
Sbjct: 136 PQIRPTALPTFHPQYPPQVGANMGFQHAGTSHNLPQSMIHPGTKPSASVGSTFPQGQTPL 195

Query: 232 XXXXXXXXXYPVGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSG 291
                    Y VGNMP G DFGNQ GNAMQVDR S    G SENLA LSGP        G
Sbjct: 196 PGQPSSQPPYQVGNMPLGPDFGNQAGNAMQVDRGSSWLPGPSENLAHLSGP-------PG 248

Query: 292 QM-GAANQPLRPPGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           QM  AANQ LRPPGLTP+MEKALLQQVMSLTPEQIN LPPEQRNQVLQLQQMLRQ
Sbjct: 249 QMSAAANQLLRPPGLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 303


>Glyma05g35080.4 
          Length = 259

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/212 (50%), Positives = 115/212 (54%), Gaps = 11/212 (5%)

Query: 1   MLTKALFQAQIMLGXXXXXXXXXXXX-XXXXXXXXSVQSAXXXXXXXXXXXXGQGGAQDQ 59
           MLTKALFQAQIMLG                     SVQ              G GGAQDQ
Sbjct: 50  MLTKALFQAQIMLGMVQAPQVVSKVRPMVSQSNQQSVQLIQKPNIQPAPLLPGHGGAQDQ 109

Query: 60  AGVSQTQIPLRKHQNQPSVPVSYAATPAMSHQSPPMAGHSLQMPQQPKGHXXXXXXXXXX 119
           AGVSQTQIPLRKHQNQPSVP+S +A PAMSHQS PMA HSL MPQQ KGH          
Sbjct: 110 AGVSQTQIPLRKHQNQPSVPIS-SAVPAMSHQSQPMAAHSLPMPQQHKGHPTPQMAPVSL 168

Query: 120 XXXXXXXNIXXXXXXXXXXXXXXTQMQTASSQLQQPLQAPGFPHMXXXXXXXXXXXXXSA 179
                  N+              TQM TASSQLQQPLQ  GF                + 
Sbjct: 169 PQSSQLPNV-------PLPSLHQTQMATASSQLQQPLQTSGF--PPLQPPLPPQIRPTAL 219

Query: 180 SSFHPQYPPQMGSNLGFQHAGASHNLQQSMFH 211
            +FHPQYPPQ+G+N+GFQHAG SHNL QSM H
Sbjct: 220 PTFHPQYPPQVGANMGFQHAGTSHNLPQSMIH 251


>Glyma13g18980.1 
          Length = 132

 Score =  133 bits (334), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/103 (73%), Positives = 80/103 (77%), Gaps = 2/103 (1%)

Query: 243 VGNMPFGHDFGNQGGNAMQVDRVSRMHGGHSENLAQLSGPLGPPSLVSGQMGAANQPLRP 302
           VGNMP G +FGNQ GNA QVDR S +    S+NLA LSGP  P  +VS QMGAANQPLRP
Sbjct: 32  VGNMPLGPEFGNQAGNATQVDRGSSLMPSPSDNLAHLSGP--PGYVVSAQMGAANQPLRP 89

Query: 303 PGLTPDMEKALLQQVMSLTPEQINHLPPEQRNQVLQLQQMLRQ 345
           P LTPDMEKALLQQV SLT  QIN L PEQRNQVLQLQQML Q
Sbjct: 90  PVLTPDMEKALLQQVTSLTLGQINLLSPEQRNQVLQLQQMLHQ 132