Miyakogusa Predicted Gene
- Lj0g3v0314959.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0314959.1 tr|Q4ABN9|Q4ABN9_BRARP 80A08_28 OS=Brassica rapa
subsp. pekinensis GN=80A08_28 PE=4 SV=1,45.24,3e-19, ,CUFF.22265.1
(124 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g14260.1 162 5e-41
Glyma05g31050.1 152 9e-38
Glyma18g01930.1 143 4e-35
Glyma11g38030.1 125 8e-30
Glyma06g09380.1 75 2e-14
Glyma17g16860.1 70 6e-13
Glyma04g09250.1 67 5e-12
Glyma05g23200.1 65 2e-11
Glyma07g01010.1 61 2e-10
Glyma01g40470.1 61 3e-10
Glyma17g12260.1 59 1e-09
Glyma08g20380.1 57 4e-09
Glyma15g02920.1 56 7e-09
Glyma08g22640.1 54 3e-08
Glyma13g42460.1 54 4e-08
Glyma07g03440.1 53 6e-08
Glyma15g01070.1 49 1e-06
Glyma01g45370.1 47 6e-06
Glyma11g04810.1 47 7e-06
Glyma09g07480.1 46 9e-06
>Glyma08g14260.1
Length = 127
Score = 162 bits (411), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 93/129 (72%), Positives = 104/129 (80%), Gaps = 7/129 (5%)
Query: 1 MASLNSHQCFT-TLFLIILLNHLPY---LVSTSNQPKPAISPRELLFEEKNRLGSMPPSC 56
MASLNS+ +T T LIILL H + L S SN P+PAIS RELLFEEKNRLGS+PPSC
Sbjct: 1 MASLNSYHYYTNTSLLIILLLHNLFSLSLASASNHPQPAISTRELLFEEKNRLGSIPPSC 60
Query: 57 HNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSL-QGTRYSNYKPLGWKC 115
HNKCN+CHPCMAVQVPTLP+H+S PPDL+KTA+M + PS QG RYSNYKPLGWKC
Sbjct: 61 HNKCNDCHPCMAVQVPTLPSHDSN--PPDLTKTAAMATFLNPSSPQGNRYSNYKPLGWKC 118
Query: 116 HCGDHFFNP 124
HCGDHFFNP
Sbjct: 119 HCGDHFFNP 127
>Glyma05g31050.1
Length = 127
Score = 152 bits (383), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 86/129 (66%), Positives = 100/129 (77%), Gaps = 7/129 (5%)
Query: 1 MASLNSHQCFTTLFLIILLNHLPYLVSTS----NQPKPAISPRELLFEEKNRLGSMPPSC 56
MASLNS+ +TT L+I+L L + N P+ AISPRELLF EKNRLGS+PPSC
Sbjct: 1 MASLNSYHYYTTTSLLIILLLHDLLSLSLVSASNHPQSAISPRELLFGEKNRLGSIPPSC 60
Query: 57 HNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSL-QGTRYSNYKPLGWKC 115
HNKCN+CHPCMAVQVPTL +H+S PPDL+KTA+M ++ PS QG RYSNYKPLGWKC
Sbjct: 61 HNKCNDCHPCMAVQVPTLLSHDSN--PPDLTKTAAMASFLNPSSPQGNRYSNYKPLGWKC 118
Query: 116 HCGDHFFNP 124
HCGDHFFNP
Sbjct: 119 HCGDHFFNP 127
>Glyma18g01930.1
Length = 127
Score = 143 bits (361), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/130 (63%), Positives = 92/130 (70%), Gaps = 11/130 (8%)
Query: 1 MASLNSHQCFTTLFLII------LLNHLPYLVSTSNQPKPAISPRELLFEEKNRLGSMPP 54
MAS NS Q TT L+I LL+HL VS NQP+ AI P + L EEKNRLGSMPP
Sbjct: 3 MASFNSIQNSTTPILLITILITFLLHHLLCPVSCFNQPQHAIPPPDPLCEEKNRLGSMPP 62
Query: 55 SCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWK 114
+CHNKCN CHPCMAVQVP P+H V+ P L+ TA+ME + LQG RYSNYKPL WK
Sbjct: 63 TCHNKCNRCHPCMAVQVPASPSHERVH--PGLAPTAAMEVF---FLQGNRYSNYKPLSWK 117
Query: 115 CHCGDHFFNP 124
CHCGDHFFNP
Sbjct: 118 CHCGDHFFNP 127
>Glyma11g38030.1
Length = 130
Score = 125 bits (315), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 71/106 (66%), Positives = 78/106 (73%), Gaps = 6/106 (5%)
Query: 21 HLPYLVSTSNQPKPAISPRELLFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSV 80
HL VS NQP+ AI P + L EE+NRLGSMPP+CHNKCN+CHPCMAVQVPT P H V
Sbjct: 29 HLLCPVSCFNQPQHAIPPPDPLCEEQNRLGSMPPTCHNKCNQCHPCMAVQVPTSPNHERV 88
Query: 81 NPPPDLSKTASMENWPYPSLQG--TRYSNYKPLGWKCHCGDHFFNP 124
+ P L TASME + LQG RYSNYKPL WKCHCGDHFFNP
Sbjct: 89 H-PGLLPPTASMEVF---FLQGNTNRYSNYKPLSWKCHCGDHFFNP 130
>Glyma06g09380.1
Length = 129
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 36 ISPREL-LFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMEN 94
++P+E+ + K R+GS PP C +C+ C C AVQVP +P + S + +
Sbjct: 41 VAPKEMRIMVAKPRIGSRPPKCEKRCSSCGHCEAVQVPVVPQIFQTHRRRHYSSERATKA 100
Query: 95 WPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
Y S +G SNYKP+ WKC CGD+ FNP
Sbjct: 101 VTYSS-RGDDLSNYKPMSWKCKCGDYLFNP 129
>Glyma17g16860.1
Length = 129
Score = 69.7 bits (169), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 60/120 (50%), Gaps = 11/120 (9%)
Query: 9 CFTTLFLIILLNHLPYLVSTSNQPKPAISPRELLFEEKN----RLGSMPPSCHNKCNECH 64
C LFLII LV + + R+ + E+K R+GS PP C +C C
Sbjct: 17 CICLLFLIISSWIQKGLVIEGRKTPKLSNFRQTVSEDKTMLRPRIGSRPPMCERRCRSCE 76
Query: 65 PCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
C A+QVPT P N + SK +S+ Y + G+ SNYKP+ WKC CG+ FNP
Sbjct: 77 HCEAIQVPTNPQMQ--NRKKNSSKFSSI---AYARVGGS--SNYKPMSWKCKCGNLIFNP 129
>Glyma04g09250.1
Length = 96
Score = 66.6 bits (161), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 42 LFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLP---THNSVNPPPDLSKTASMENWPYP 98
+ K R+GS PP C +CN C C AVQVP P TH +K +
Sbjct: 17 IMVAKPRIGSRPPKCEKRCNTCGHCEAVQVPVAPQIQTHRRHYSSARATKAVTY------ 70
Query: 99 SLQGTRYSNYKPLGWKCHCGDHFFNP 124
S + SNYKP+ WKC CGD+ FNP
Sbjct: 71 SSRDDHLSNYKPMSWKCKCGDYLFNP 96
>Glyma05g23200.1
Length = 81
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/77 (44%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 48 RLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSN 107
R+GS PP C +C C C A+QVPT P + N + SK +S+ Y + G+ SN
Sbjct: 12 RIGSRPPKCERRCRSCEHCEAIQVPTNP--QAQNRKKNSSKFSSI---AYARVGGS--SN 64
Query: 108 YKPLGWKCHCGDHFFNP 124
YKP+ WKC CG+ FNP
Sbjct: 65 YKPMSWKCKCGNLIFNP 81
>Glyma07g01010.1
Length = 99
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 23/115 (20%)
Query: 13 LFLIILLNHLPYLVSTSNQP-KPAISP--RELLFEEKNRLGSMPPSCHNKCNECHPCMAV 69
LF +L + LVS +P P S +E +++GS PPSC +KC C PC A+
Sbjct: 5 LFCFLLALQIVSLVSAVRKPFLPGTSETMKEAYEGGVSKIGSSPPSCEHKCYGCVPCEAI 64
Query: 70 QVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
QVP+ T S G +Y+NY+P WKC CG F++P
Sbjct: 65 QVPSTSTRR--------------------SHLGIQYANYEPESWKCKCGLSFYSP 99
>Glyma01g40470.1
Length = 81
Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 46 KNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRY 105
+ ++GS PP C +C C C A+QVPT NP K S G
Sbjct: 10 RAQIGSRPPKCERRCRSCGHCEAIQVPT-------NPQAQNGKINSSTVSTIAFTMGEGG 62
Query: 106 SNYKPLGWKCHCGDHFFNP 124
SNYKP+ WKC CG+ FNP
Sbjct: 63 SNYKPMSWKCKCGNRIFNP 81
>Glyma17g12260.1
Length = 110
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Query: 4 LNSHQCFTTLFLIILLNHLPYLVSTSNQPKPAISPRELLFEEKNRLGSMPPSCHNKCNEC 63
LN + TL LII L P S S A ++L ++K LGS PP C NKC C
Sbjct: 8 LNGLKTSVTLILIISLTLFP---SNSVGSASAKDGGKVLKQKKLVLGSRPPKCVNKCLSC 64
Query: 64 HPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFN 123
PCMA V + P H + + + R Y L WKC CG+ FF
Sbjct: 65 KPCMAALVIS-PHHR--------------DGHTHKAKTVQRDEGYYLLSWKCKCGNKFFQ 109
Query: 124 P 124
P
Sbjct: 110 P 110
>Glyma08g20380.1
Length = 75
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 20/78 (25%)
Query: 47 NRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYS 106
+++GS PPSC +KC C PC A+QVP+ T S G +Y+
Sbjct: 18 SKIGSSPPSCEHKCYGCVPCEAIQVPSTSTRR--------------------SHLGIQYA 57
Query: 107 NYKPLGWKCHCGDHFFNP 124
NY+P WKC CG F++P
Sbjct: 58 NYEPESWKCKCGLSFYSP 75
>Glyma15g02920.1
Length = 130
Score = 56.2 bits (134), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 26/101 (25%)
Query: 30 NQPKPAISPRELLFEEK------NRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPP 83
+ P + P + L EE +++GS PPSC +KC C PC A+QVP+ +
Sbjct: 50 SSPSNTVEPEKGLMEEAYYYRGVSKIGSSPPSCEHKCYGCTPCEAIQVPSTSSRR----- 104
Query: 84 PDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
S G +Y+NY+P WKC CG ++P
Sbjct: 105 ---------------SHLGLQYTNYEPESWKCKCGPSLYSP 130
>Glyma08g22640.1
Length = 79
Score = 53.9 bits (128), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 38/88 (43%), Gaps = 15/88 (17%)
Query: 37 SPRELLFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWP 96
S RE L E K +GS PP+C NKC C PCMA V +P H +S +
Sbjct: 7 STREGLEESKMVIGSKPPACVNKCKSCRPCMATLV--VPNHQKRKKGFKVSSRGDDD--- 61
Query: 97 YPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
Y L WKC CG+ F P
Sbjct: 62 ----------TYYLLSWKCKCGNKLFQP 79
>Glyma13g42460.1
Length = 95
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 46/104 (44%), Gaps = 31/104 (29%)
Query: 32 PKPAISPRELLFEEKN-----------RLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSV 80
P P SP + EK ++GS PPSC +KC C PC A+QVP
Sbjct: 12 PGPVSSPSNTVESEKGLMEEAYSYRVSKIGSSPPSCEHKCYGCTPCEAIQVP-------- 63
Query: 81 NPPPDLSKTASMENWPYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
S +W S G +Y+NY+P WKC CG ++P
Sbjct: 64 ----------STSSW--RSHLGLQYTNYEPESWKCKCGPSLYSP 95
>Glyma07g03440.1
Length = 77
Score = 53.1 bits (126), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 37/89 (41%), Gaps = 16/89 (17%)
Query: 36 ISPRELLFEEKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENW 95
+ RE L + K +GS PP+C NKC C PCMA V +P H S+
Sbjct: 5 VETREGLEQRKMVIGSKPPACVNKCKSCRPCMATLV--VPNHQKRKGFKVSSRGDD---- 58
Query: 96 PYPSLQGTRYSNYKPLGWKCHCGDHFFNP 124
Y L WKC CGD F P
Sbjct: 59 ----------DTYYLLSWKCKCGDKLFQP 77
>Glyma15g01070.1
Length = 130
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 35/80 (43%), Gaps = 16/80 (20%)
Query: 45 EKNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTR 104
K +GS PP+C NKC C PC+A V +P H N+ + G
Sbjct: 67 SKVVIGSKPPACGNKCMSCRPCIATVV--VPNHKRKG-----------FNFKF---NGVD 110
Query: 105 YSNYKPLGWKCHCGDHFFNP 124
+Y L WKC CGD F P
Sbjct: 111 DDSYYLLSWKCRCGDKLFQP 130
>Glyma01g45370.1
Length = 112
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 25/77 (32%)
Query: 48 RLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYSN 107
RLGS P +C KCN+C PC+ V+V + A EN
Sbjct: 61 RLGSFPATCQTKCNQCKPCVPVEV-------------TIKTVAEEEN------------E 95
Query: 108 YKPLGWKCHCGDHFFNP 124
Y P+ WKC C + F+P
Sbjct: 96 YYPIAWKCMCQSNIFSP 112
>Glyma11g04810.1
Length = 130
Score = 46.6 bits (109), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 46 KNRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRY 105
+ ++GS PP C +C C C A+QVPT NP K S G
Sbjct: 59 RAQIGSRPPRCERRCRSCGHCEAIQVPT-------NPQAQNGKINSSTVSTIVFTMGEGS 111
Query: 106 SNYKPLGWKCHCGDHFFNP 124
SNYKP+ WKC CG+ FNP
Sbjct: 112 SNYKPMSWKCKCGNRIFNP 130
>Glyma09g07480.1
Length = 62
Score = 45.8 bits (107), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 23/69 (33%)
Query: 47 NRLGSMPPSCHNKCNECHPCMAVQVPTLPTHNSVNPPPDLSKTASMENWPYPSLQGTRYS 106
+RLGS PP C +KC C PC +Q+PT L G +Y+
Sbjct: 15 SRLGSTPPRCEHKCGGCIPCNPIQIPT-----------------------NNDLLGAQYA 51
Query: 107 NYKPLGWKC 115
NY+P GWKC
Sbjct: 52 NYEPEGWKC 60