Miyakogusa Predicted Gene
- Lj0g3v0314699.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0314699.1 Non Chatacterized Hit- tr|B8AGG1|B8AGG1_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,69.05,2e-19,INTEGRATOR COMPLEX SUBUNIT 11,NULL; CLEAVAGE AND
POLYADENYLATION SPECIFICITY FACTOR,NULL; seg,NULL,CUFF.21260.1
(175 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma02g09360.1 151 3e-37
Glyma07g26470.2 151 4e-37
Glyma07g26470.1 151 4e-37
Glyma05g34580.1 142 2e-34
Glyma08g05080.1 141 3e-34
Glyma03g27500.1 98 5e-21
Glyma11g02830.1 93 1e-19
Glyma17g13980.1 92 3e-19
Glyma18g45940.1 84 6e-17
Glyma01g42630.1 81 5e-16
Glyma05g03430.1 77 7e-15
Glyma05g03430.2 77 7e-15
Glyma03g14480.1 65 3e-11
Glyma19g30480.1 64 6e-11
Glyma09g40170.1 61 5e-10
Glyma09g09720.1 55 5e-08
Glyma14g28750.1 54 8e-08
Glyma20g20200.1 52 4e-07
Glyma02g34150.1 51 5e-07
Glyma04g38880.1 50 1e-06
>Glyma02g09360.1
Length = 357
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 84/178 (47%), Positives = 93/178 (52%), Gaps = 7/178 (3%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
MSWNMAFVVVSAAMLACT E P TPIR+WIVGYALQCL+HV+LVW EY
Sbjct: 74 MSWNMAFVVVSAAMLACTTSEHPTTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSRSG 133
Query: 61 XXLVEXXX-------XXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVS 113
F KRCE++NTGVSF+WW+VGFYWVVS
Sbjct: 134 SQRARDVESDAGSGDDDDYSDDGDGSSGNTSRSRFAKRCESLNTGVSFLWWIVGFYWVVS 193
Query: 114 GGDMLMQDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
GGD+L+QDAPRLYWL CVV YAVAGQ
Sbjct: 194 GGDILLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 251
>Glyma07g26470.2
Length = 309
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
MSWNMAFVVV+A MLACT E+PNTPIR+WIVGYALQCL+HV+LVW EY
Sbjct: 75 MSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSHHG 134
Query: 61 XXLVEXXXXXXXXXXXXXXXXX-----XXXXXFTKRCETINTGVSFIWWMVGFYWVVSGG 115
+ FTKRCE +NTGVSF+WW+VGFYWVVSGG
Sbjct: 135 QRARDVESDAGSGDEDYSDDRDWSSGYSSRSRFTKRCELLNTGVSFLWWIVGFYWVVSGG 194
Query: 116 DMLMQDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
++L+QDAPRLYWL CVV YAVAGQ
Sbjct: 195 NILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 250
>Glyma07g26470.1
Length = 356
Score = 151 bits (381), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 95/176 (53%), Gaps = 5/176 (2%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
MSWNMAFVVV+A MLACT E+PNTPIR+WIVGYALQCL+HV+LVW EY
Sbjct: 75 MSWNMAFVVVTAVMLACTTAERPNTPIRVWIVGYALQCLVHVLLVWLEYRRRSRRDSHHG 134
Query: 61 XXLVEXXXXXXXXXXXXXXXXX-----XXXXXFTKRCETINTGVSFIWWMVGFYWVVSGG 115
+ FTKRCE +NTGVSF+WW+VGFYWVVSGG
Sbjct: 135 QRARDVESDAGSGDEDYSDDRDWSSGYSSRSRFTKRCELLNTGVSFLWWIVGFYWVVSGG 194
Query: 116 DMLMQDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
++L+QDAPRLYWL CVV YAVAGQ
Sbjct: 195 NILLQDAPRLYWLVVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 250
>Glyma05g34580.1
Length = 344
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 79/172 (45%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
++WNMAFV+VSA MLACTV E PNTPIR WI GYALQCL+HV LVW EY
Sbjct: 67 ITWNMAFVLVSAVMLACTVKENPNTPIRWWICGYALQCLVHVALVWLEYRRRNDAPRDEE 126
Query: 61 XXL-VEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLM 119
++ FTKRC ++NT +S +WWMVGFYWVVSGGD+L+
Sbjct: 127 SAASLQYDDVNDSDEDDVGTSGSSSSSGFTKRCASLNTMISLLWWMVGFYWVVSGGDILL 186
Query: 120 QDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
QDAPRLYWL CVV YAVAGQ
Sbjct: 187 QDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 238
>Glyma08g05080.1
Length = 345
Score = 141 bits (356), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 91/172 (52%), Gaps = 1/172 (0%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
M+WNMAFVVVSA MLACTV E PNTPIR WI GYALQCLLHV LVW EY
Sbjct: 67 MTWNMAFVVVSAVMLACTVKENPNTPIRWWICGYALQCLLHVALVWLEYRRRNDAPGDED 126
Query: 61 XXL-VEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLM 119
++ FTKRC ++NT +S +WWMVGFYWVVSGGD+L+
Sbjct: 127 SAANLDYDDVNDSDEDDVGTSGSSSSTGFTKRCASLNTMISLLWWMVGFYWVVSGGDILL 186
Query: 120 QDAPRLYWLXXXXXXXXXXXXXXCVVXXXXXXXXXXXXXXXXXXXXYAVAGQ 171
QDAPRLYWL CVV YAVAGQ
Sbjct: 187 QDAPRLYWLTVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQ 238
>Glyma03g27500.1
Length = 325
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 70/128 (54%), Gaps = 24/128 (18%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
M WN+AFVVV+A +L T+ E+P+TP+RLW+ GYA +C+LH+ V+FE+
Sbjct: 72 MVWNLAFVVVAAGVLLSTLRERPSTPLRLWLCGYAFECVLHMAFVYFEFRTGIRDSFSHT 131
Query: 61 XXLVEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGDMLMQ 120
+ K+ E +NT S +WW+ GFYW+V G L++
Sbjct: 132 AYSI------------------------VKKLEPMNTLASSVWWIFGFYWIVVGDQALLE 167
Query: 121 DAPRLYWL 128
D+PRLYWL
Sbjct: 168 DSPRLYWL 175
>Glyma11g02830.1
Length = 387
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
WN+AFVVV+ +L + E P P+RLWIVGYA+QC+LH+V V EY
Sbjct: 91 WNLAFVVVAGTVLVLSASEAPGMPLRLWIVGYAMQCVLHMVFVCVEYRRRRRQQPAAASS 150
Query: 63 LVEX----------------XXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMV 106
+ + K E+ NT SF+WW++
Sbjct: 151 VQDRVGSSSGNLSVSSREGSASASASAQNVLLGQLDDESTSVAKHLESANTMFSFVWWII 210
Query: 107 GFYWVVSGGDMLMQDAPRLYWL 128
GFYWV +GG L QD+P+LYWL
Sbjct: 211 GFYWVSAGGQALAQDSPQLYWL 232
>Glyma17g13980.1
Length = 380
Score = 92.0 bits (227), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
WN AFV +A +L + E PN P+RLWIVGYALQ +LHV V EY
Sbjct: 94 WNCAFVAAAATVLVLSRNENPNMPLRLWIVGYALQSVLHVACVCVEYRRRLRHREHSNAA 153
Query: 63 LV------EXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSGGD 116
V + K E+ NT SFIWW+VGFYWV + +
Sbjct: 154 AVSGDGSGDLSSPSMDGSGHYVSFDDDGISSMAKHLESANTMFSFIWWVVGFYWVSADSE 213
Query: 117 MLMQDAPRLYWL 128
L+QD+P LYWL
Sbjct: 214 ALVQDSPLLYWL 225
>Glyma18g45940.1
Length = 375
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 48/136 (35%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXX 60
++WN F+ + A++LA + E P P+R WIVGY LQ LH + V E+
Sbjct: 87 VAWNAVFLAIGASVLALSTDEDPCVPLRAWIVGYLLQGALHSLCVVAEFTRRRRRRVSGT 146
Query: 61 XXLVEXXXXXXXXXXXXXXXXXXXXXXF--------TKRCETINTGVSFIWWMVGFYWVV 112
F TK ET+NT +SFIWW+VGFYWV
Sbjct: 147 HPGSNVVGHVQWSFSSESDEEFYPPEQFLEGDGNRITKHIETVNTMLSFIWWIVGFYWVT 206
Query: 113 SGGDMLMQDAPRLYWL 128
+GG L +D+P+LYWL
Sbjct: 207 AGGQSLTRDSPQLYWL 222
>Glyma01g42630.1
Length = 386
Score = 81.3 bits (199), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 67/141 (47%), Gaps = 15/141 (10%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
WN AFVVV+ A+L + E P P+RLWIVGYA+QC+LH+V V EY
Sbjct: 91 WNFAFVVVAGAVLVLSASEAPGMPLRLWIVGYAMQCVLHMVCVCVEYRRRRRQQRAAASS 150
Query: 63 L---------------VEXXXXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVG 107
+ E K E+ NT SF+WW++G
Sbjct: 151 VQDRVGSSSGNLSVSSREGSASGSAQYVSLGQLDDEGTSSVAKHLESANTMFSFVWWIIG 210
Query: 108 FYWVVSGGDMLMQDAPRLYWL 128
FYWV +GG L QD+P+LYWL
Sbjct: 211 FYWVSAGGQALAQDSPQLYWL 231
>Glyma05g03430.1
Length = 381
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
WN AFV +A + + E PN P+RLWIVGYALQC+LHV V EY
Sbjct: 92 WNFAFVAAAATVFILSRNENPNMPLRLWIVGYALQCVLHVACVCVEYQRRLRRREQSNAA 151
Query: 63 LVEXX--------XXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSG 114
+ K E+ NT SFIWW+VGFYWV +
Sbjct: 152 AIAGGGSGDLGPPSMDGSGHYVSLAQFDDDGISMAKHLESANTMFSFIWWVVGFYWVSAD 211
Query: 115 GDMLMQDAPRLYWL 128
+ L++D+P LYWL
Sbjct: 212 SESLVRDSPLLYWL 225
>Glyma05g03430.2
Length = 380
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 62/134 (46%), Gaps = 8/134 (5%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEYXXXXXXXXXXXXX 62
WN AFV +A + + E PN P+RLWIVGYALQC+LHV V EY
Sbjct: 92 WNFAFVAAAATVFILSRNENPNMPLRLWIVGYALQCVLHVACVCVEYQRRLRRREQSNAA 151
Query: 63 LVEXX--------XXXXXXXXXXXXXXXXXXXXFTKRCETINTGVSFIWWMVGFYWVVSG 114
+ K E+ NT SFIWW+VGFYWV +
Sbjct: 152 AIAGGGSGDLGPPSMDGSGHYVSLAQFDDDGISMAKHLESANTMFSFIWWVVGFYWVSAD 211
Query: 115 GDMLMQDAPRLYWL 128
+ L++D+P LYWL
Sbjct: 212 SESLVRDSPLLYWL 225
>Glyma03g14480.1
Length = 44
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHV 42
M+WN AFVVVSA MLACT+ E PNTPI WI YALQCL+H+
Sbjct: 1 MTWNTAFVVVSAVMLACTIKENPNTPICWWICDYALQCLIHM 42
>Glyma19g30480.1
Length = 411
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 38/49 (77%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEY 49
M WN+AFVV +A +L T+ E+P TP+RLW+ GYA +C+LH+ V+FE+
Sbjct: 74 MVWNLAFVVAAAGVLLSTLRERPATPLRLWLCGYAFECVLHMAFVYFEF 122
>Glyma09g40170.1
Length = 356
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 32/40 (80%)
Query: 89 TKRCETINTGVSFIWWMVGFYWVVSGGDMLMQDAPRLYWL 128
TK E+ NT +SFIWW+VGFYWV +GG L +D+P+LYWL
Sbjct: 164 TKHIESANTMLSFIWWIVGFYWVTAGGQSLTRDSPQLYWL 203
>Glyma09g09720.1
Length = 88
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHVVLVWFEY 49
WN+AFVV + +L + E P P RLWIVGYA+QC+LH+V V EY
Sbjct: 2 WNLAFVVAAGTVLVLSASEVPGMP-RLWIVGYAMQCVLHMVFVCVEY 47
>Glyma14g28750.1
Length = 80
Score = 53.9 bits (128), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLL 40
M+WNMAF+VV A MLA TV + PN PI WI Y LQCL+
Sbjct: 1 MTWNMAFIVVWAVMLAYTVKDNPNMPIHWWIYNYVLQCLI 40
>Glyma20g20200.1
Length = 122
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/36 (66%), Positives = 26/36 (72%)
Query: 1 MSWNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYAL 36
M WN+AF+VVS MLACTV E PNT IR I GY L
Sbjct: 24 MMWNIAFMVVSVVMLACTVKENPNTSIRRRISGYTL 59
>Glyma02g34150.1
Length = 30
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 21/25 (84%), Positives = 25/25 (100%)
Query: 102 IWWMVGFYWVVSGGDMLMQDAPRLY 126
+WWMVGFYWVVSGG++L+QDAPRLY
Sbjct: 5 LWWMVGFYWVVSGGEILLQDAPRLY 29
>Glyma04g38880.1
Length = 83
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 3 WNMAFVVVSAAMLACTVGEQPNTPIRLWIVGYALQCLLHV 42
WN AFV A +L E PN P++LWIVGYAL C+LHV
Sbjct: 13 WNFAFV---ATVLVLNRNENPNMPLKLWIVGYALPCILHV 49