Miyakogusa Predicted Gene

Lj0g3v0311169.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0311169.1 Non Chatacterized Hit- tr|B9SBE6|B9SBE6_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,65.22,2e-16,seg,NULL,CUFF.20994.1
         (97 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma07g06010.1                                                        69   1e-12

>Glyma07g06010.1 
          Length = 90

 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 33/38 (86%), Positives = 35/38 (92%), Gaps = 2/38 (5%)

Query: 16 CGGSIMSCDKLDRMANWVGANMASAFFASLERCSCINL 53
          CG   MSCDKLDR+ANWVGAN+ASAFFASLERCSCINL
Sbjct: 22 CG--FMSCDKLDRVANWVGANVASAFFASLERCSCINL 57