Miyakogusa Predicted Gene
- Lj0g3v0309869.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0309869.1 Non Chatacterized Hit- tr|C5XQY9|C5XQY9_SORBI
Putative uncharacterized protein Sb03g027630
OS=Sorghu,60.81,3e-19,RING/U-box,NULL; RINGv,Zinc finger,
RING-CH-type; no description,Zinc finger, RING/FYVE/PHD-type;
PR,NODE_51376_length_471_cov_106.885353.path3.1
(105 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma11g36020.1 212 6e-56
Glyma18g02420.1 212 9e-56
Glyma05g31600.1 179 8e-46
Glyma05g08220.2 112 6e-26
Glyma05g08220.1 112 6e-26
Glyma17g12750.4 110 4e-25
Glyma17g12750.3 110 4e-25
Glyma17g12750.2 110 4e-25
Glyma17g12750.1 110 4e-25
Glyma15g00320.2 109 6e-25
Glyma15g00320.1 109 6e-25
Glyma13g45010.1 109 6e-25
Glyma15g00320.3 103 5e-23
Glyma08g14820.1 62 1e-10
Glyma02g11960.1 47 3e-06
Glyma01g05800.1 47 5e-06
>Glyma11g36020.1
Length = 323
Score = 212 bits (540), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 1 MADHSDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60
MADHSDSSPLVPP PL+D EIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR
Sbjct: 1 MADHSDSSPLVPPLPLTDPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60
Query: 61 DCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
+CLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF
Sbjct: 61 ECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
>Glyma18g02420.1
Length = 323
Score = 212 bits (539), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 100/105 (95%), Positives = 102/105 (97%)
Query: 1 MADHSDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60
MADHSDSSPLVPP PL+D EIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR
Sbjct: 1 MADHSDSSPLVPPLPLADPSEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHR 60
Query: 61 DCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
+CLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF
Sbjct: 61 ECLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
>Glyma05g31600.1
Length = 324
Score = 179 bits (453), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 83/101 (82%), Positives = 91/101 (90%), Gaps = 2/101 (1%)
Query: 5 SDSSPLVPPQPLSDAFEIDLEAGPSEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLD 64
+DSSPL+PP P++ EIDLE GPSEQIQCRICLETDGR+FI PCKCKGTSKYVHR+CLD
Sbjct: 2 TDSSPLIPPSPVTVT-EIDLEEGPSEQIQCRICLETDGRNFIVPCKCKGTSKYVHRECLD 60
Query: 65 HWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
HWRA+KEGFAFAHCTTCKAPYHLRVH A R+WRT KFRFF
Sbjct: 61 HWRAVKEGFAFAHCTTCKAPYHLRVH-GAYRQWRTFKFRFF 100
>Glyma05g08220.2
Length = 309
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 15/118 (12%)
Query: 1 MADHSDSSPLVPPQPLSDAF----------EIDLEAGPSEQIQCRICLETDGR---DFIA 47
M + SDS PL+ Q D E D+EAG CRICLE+D + I+
Sbjct: 13 MQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDELIS 70
Query: 48 PCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV D WR +KFR F
Sbjct: 71 PCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLF 128
>Glyma05g08220.1
Length = 309
Score = 112 bits (281), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/118 (50%), Positives = 73/118 (61%), Gaps = 15/118 (12%)
Query: 1 MADHSDSSPLVPPQPLSDAF----------EIDLEAGPSEQIQCRICLETDGR---DFIA 47
M + SDS PL+ Q D E D+EAG CRICLE+D + I+
Sbjct: 13 MQNPSDSDPLLHNQEEEDGSPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDELIS 70
Query: 48 PCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV D WR +KFR F
Sbjct: 71 PCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESFEDNSWRKIKFRLF 128
>Glyma17g12750.4
Length = 311
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)
Query: 1 MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
M + SDS PL+ Q P S E D+EAG CRICLE+D +
Sbjct: 13 MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70
Query: 46 IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV D WR +KFR F
Sbjct: 71 ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130
>Glyma17g12750.3
Length = 311
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)
Query: 1 MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
M + SDS PL+ Q P S E D+EAG CRICLE+D +
Sbjct: 13 MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70
Query: 46 IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV D WR +KFR F
Sbjct: 71 ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130
>Glyma17g12750.2
Length = 311
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)
Query: 1 MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
M + SDS PL+ Q P S E D+EAG CRICLE+D +
Sbjct: 13 MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70
Query: 46 IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV D WR +KFR F
Sbjct: 71 ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130
>Glyma17g12750.1
Length = 311
Score = 110 bits (274), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/120 (50%), Positives = 74/120 (61%), Gaps = 17/120 (14%)
Query: 1 MADHSDSSPLVPPQ--------PLSDAF----EIDLEAGPSEQIQCRICLETDGR---DF 45
M + SDS PL+ Q P S E D+EAG CRICLE+D +
Sbjct: 13 MQNPSDSDPLLHNQEEEEEDESPGSSGEIKNEEEDVEAGLLPC--CRICLESDSDPEDEL 70
Query: 46 IAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
I+PC CKGT ++VHR CLDHWR++KEGFAF+HCTTCKA +HLRV D WR +KFR F
Sbjct: 71 ISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVESIEDNTWRKIKFRLF 130
>Glyma15g00320.2
Length = 257
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 29 SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
++Q QCRICL+ G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + LR
Sbjct: 65 ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 124
Query: 89 VHVAADRKWRTLKFRFF 105
+V DR W LKF+F
Sbjct: 125 ANVPPDRWWLRLKFQFL 141
>Glyma15g00320.1
Length = 257
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 29 SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
++Q QCRICL+ G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + LR
Sbjct: 65 ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 124
Query: 89 VHVAADRKWRTLKFRFF 105
+V DR W LKF+F
Sbjct: 125 ANVPPDRWWLRLKFQFL 141
>Glyma13g45010.1
Length = 259
Score = 109 bits (273), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 29 SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
++Q QCRICL+ G D IAPC CKGT KYVHR CLD+WR+ KEGFAF+HCT C+A + LR
Sbjct: 67 ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTKEGFAFSHCTECRAVFILR 126
Query: 89 VHVAADRKWRTLKFRFF 105
+V DR W LKF+F
Sbjct: 127 ANVPPDRWWLRLKFQFL 143
>Glyma15g00320.3
Length = 256
Score = 103 bits (256), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 57/77 (74%), Gaps = 1/77 (1%)
Query: 29 SEQIQCRICLETDGRDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYHLR 88
++Q QCRICL+ G D IAPC CKGT KYVHR CLD+WR+ K GFAF+HCT C+A + LR
Sbjct: 65 ADQPQCRICLDIGGEDLIAPCHCKGTQKYVHRSCLDNWRSTK-GFAFSHCTECRAVFILR 123
Query: 89 VHVAADRKWRTLKFRFF 105
+V DR W LKF+F
Sbjct: 124 ANVPPDRWWLRLKFQFL 140
>Glyma08g14820.1
Length = 76
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/37 (75%), Positives = 32/37 (86%), Gaps = 1/37 (2%)
Query: 69 IKEGFAFAHCTTCKAPYHLRVHVAADRKWRTLKFRFF 105
++EGFAFAHCTTCKAPYHL VH +A R+WRT K RFF
Sbjct: 1 LQEGFAFAHCTTCKAPYHLSVH-SAYRQWRTFKLRFF 36
>Glyma02g11960.1
Length = 289
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 9/70 (12%)
Query: 23 DLEAGPSEQ-----IQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFA 76
D E G E+ +CRIC E DG + PC C G+ KY HR C+ HW K
Sbjct: 55 DGEGGDEEEPLIQMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDIT-- 112
Query: 77 HCTTCKAPYH 86
C C PY
Sbjct: 113 -CEICHQPYQ 121
>Glyma01g05800.1
Length = 286
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 30 EQIQCRICLETDG-RDFIAPCKCKGTSKYVHRDCLDHWRAIKEGFAFAHCTTCKAPYH 86
+ +CRIC E DG + PC C G+ KY HR C+ HW K C C PY
Sbjct: 64 QMAECRICQEEDGVSNLETPCACSGSLKYAHRKCVQHWCDEKGDIT---CEICHQPYQ 118