Miyakogusa Predicted Gene

Lj0g3v0308169.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308169.1 tr|A9S8E7|A9S8E7_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,66.67,4e-19,seg,NULL,CUFF.20797.1
         (143 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g19160.1                                                       125   1e-29
Glyma13g19160.3                                                       124   3e-29
Glyma13g19160.2                                                       124   3e-29
Glyma03g37100.1                                                        57   5e-09
Glyma19g39720.1                                                        57   9e-09

>Glyma13g19160.1 
          Length = 326

 Score =  125 bits (315), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 59/62 (95%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDG 141
           WLDEQKKLAGV S+SPVYLSLRLDGRVRGSGVGYPPWNA VAQLP VKGMWTGLLDGFDG
Sbjct: 265 WLDEQKKLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDG 324

Query: 142 RV 143
           RV
Sbjct: 325 RV 326



 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 43/71 (60%), Gaps = 12/71 (16%)

Query: 1  MALAFGSVTPNSNNTFYLTLTLPKSPPRNLINNHRN---FFSGNKGVSYGH-NLFYTDPR 56
          MA+ FG VTPNS NT  LTLT   +PP  LI NHR     FSG    SYGH NL Y+  R
Sbjct: 1  MAITFGLVTPNS-NTLCLTLT---TPP--LIANHRTTNVVFSGQSVFSYGHTNLSYSHQR 54

Query: 57 TRRASLATILC 67
             +S ATI+C
Sbjct: 55 A--SSFATIVC 63


>Glyma13g19160.3 
          Length = 233

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 59/62 (95%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDG 141
           WLDEQKKLAGV S+SPVYLSLRLDGRVRGSGVGYPPWNA VAQLP VKGMWTGLLDGFDG
Sbjct: 172 WLDEQKKLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDG 231

Query: 142 RV 143
           RV
Sbjct: 232 RV 233


>Glyma13g19160.2 
          Length = 233

 Score =  124 bits (312), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/62 (93%), Positives = 59/62 (95%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKGMWTGLLDGFDG 141
           WLDEQKKLAGV S+SPVYLSLRLDGRVRGSGVGYPPWNA VAQLP VKGMWTGLLDGFDG
Sbjct: 172 WLDEQKKLAGVPSDSPVYLSLRLDGRVRGSGVGYPPWNALVAQLPQVKGMWTGLLDGFDG 231

Query: 142 RV 143
           RV
Sbjct: 232 RV 233


>Glyma03g37100.1 
          Length = 437

 Score = 57.4 bits (137), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 32/49 (65%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPPVKG 130
           W+ +Q+K  GVS    VY+ LRLDGRVR SG G P W   V +LPP++ 
Sbjct: 382 WIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPPMEA 430


>Glyma19g39720.1 
          Length = 437

 Score = 56.6 bits (135), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/46 (54%), Positives = 30/46 (65%)

Query: 82  WLDEQKKLAGVSSESPVYLSLRLDGRVRGSGVGYPPWNAFVAQLPP 127
           W+ +Q+K  GVS    VY+ LRLDGRVR SG G P W   V +LPP
Sbjct: 382 WIRDQQKSEGVSLGEDVYIILRLDGRVRRSGKGMPDWQQIVKELPP 427