Miyakogusa Predicted Gene

Lj0g3v0308159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0308159.1 tr|A9SPD7|A9SPD7_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_133111,75.86,1e-17,PSI_PsaE,Photosystem I PsaE, reaction
centre subunit IV; no description,NULL;
PSAE_SPIOL_P12354;,Pho,CUFF.20854.1
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g19170.1                                                       108   2e-24
Glyma10g04780.1                                                       108   2e-24
Glyma10g04790.1                                                       108   2e-24
Glyma13g19190.1                                                       107   2e-24
Glyma13g19190.2                                                        57   6e-09

>Glyma13g19170.1 
          Length = 129

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/53 (96%), Positives = 52/53 (98%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RG+KVKILRKESYWYKGTGSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYAL
Sbjct: 70  RGAKVKILRKESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL 122


>Glyma10g04780.1 
          Length = 129

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/53 (96%), Positives = 52/53 (98%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RG+KVKILRKESYWYKGTGSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYAL
Sbjct: 70  RGAKVKILRKESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL 122


>Glyma10g04790.1 
          Length = 129

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/53 (96%), Positives = 52/53 (98%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RG+KVKILRKESYWYKGTGSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYAL
Sbjct: 70  RGAKVKILRKESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL 122


>Glyma13g19190.1 
          Length = 129

 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/53 (96%), Positives = 52/53 (98%)

Query: 60  RGSKVKILRKESYWYKGTGSVVAVDQDPKTRYPVVVRFNKVNYANVSTNNYAL 112
           RG+KVKILRKESYWYKGTGSVVAVDQDP TRYPVVVRFNKVNYANVSTNNYAL
Sbjct: 70  RGAKVKILRKESYWYKGTGSVVAVDQDPNTRYPVVVRFNKVNYANVSTNNYAL 122


>Glyma13g19190.2 
          Length = 105

 Score = 56.6 bits (135), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 26/26 (100%)

Query: 60 RGSKVKILRKESYWYKGTGSVVAVDQ 85
          RG+KVKILRKESYWYKGTGSVVAVDQ
Sbjct: 70 RGAKVKILRKESYWYKGTGSVVAVDQ 95