Miyakogusa Predicted Gene

Lj0g3v0306549.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306549.1 tr|A9TLR6|A9TLR6_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_108397,35.15,7e-17,no description,YqgF/RNase H-like
domain; Likely ribonuclease with RNase H fold.,YqgF/RNase H-like
do,CUFF.20657.1
         (210 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g42880.3                                                       266   1e-71
Glyma01g42880.2                                                       266   1e-71
Glyma01g42880.1                                                       266   1e-71
Glyma11g02590.1                                                       187   1e-47

>Glyma01g42880.3 
          Length = 170

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNKIASPFSVLIRKKSNIG 99
           MR+++PL LFH+L K T  +RGRL+GLDVGDKYVG+ALSDFDN IASPF+VL+RKK+NI 
Sbjct: 1   MRYMKPLPLFHDL-KNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFNVLVRKKTNIS 59

Query: 100 LMASDFETLISKYSLKGFVIGIPFNNFRVSPDAVQVKVLIDALSKTKKLEGLNYTYWNEC 159
           LMASD E+LI+KYSLKGFVIGIPF+  +VS DA+QVKV ID L +TK LEG+ YTYWNE 
Sbjct: 60  LMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNES 119

Query: 160 FTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGYLDYVNRKMRQQATQ 210
           FTS+NV LLLKPLNLNHPV SKT+LDKFAAVGILQGYLD+VNRKM+ +AT+
Sbjct: 120 FTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE 170


>Glyma01g42880.2 
          Length = 170

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNKIASPFSVLIRKKSNIG 99
           MR+++PL LFH+L K T  +RGRL+GLDVGDKYVG+ALSDFDN IASPF+VL+RKK+NI 
Sbjct: 1   MRYMKPLPLFHDL-KNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFNVLVRKKTNIS 59

Query: 100 LMASDFETLISKYSLKGFVIGIPFNNFRVSPDAVQVKVLIDALSKTKKLEGLNYTYWNEC 159
           LMASD E+LI+KYSLKGFVIGIPF+  +VS DA+QVKV ID L +TK LEG+ YTYWNE 
Sbjct: 60  LMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNES 119

Query: 160 FTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGYLDYVNRKMRQQATQ 210
           FTS+NV LLLKPLNLNHPV SKT+LDKFAAVGILQGYLD+VNRKM+ +AT+
Sbjct: 120 FTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE 170


>Glyma01g42880.1 
          Length = 170

 Score =  266 bits (679), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 128/171 (74%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNKIASPFSVLIRKKSNIG 99
           MR+++PL LFH+L K T  +RGRL+GLDVGDKYVG+ALSDFDN IASPF+VL+RKK+NI 
Sbjct: 1   MRYMKPLPLFHDL-KNTTPQRGRLLGLDVGDKYVGLALSDFDNNIASPFNVLVRKKTNIS 59

Query: 100 LMASDFETLISKYSLKGFVIGIPFNNFRVSPDAVQVKVLIDALSKTKKLEGLNYTYWNEC 159
           LMASD E+LI+KYSLKGFVIGIPF+  +VS DA+QVKV ID L +TK LEG+ YTYWNE 
Sbjct: 60  LMASDLESLIAKYSLKGFVIGIPFDKHQVSSDAMQVKVFIDNLCRTKMLEGVKYTYWNES 119

Query: 160 FTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQGYLDYVNRKMRQQATQ 210
           FTS+NV LLLKPLNLNHPV SKT+LDKFAAVGILQGYLD+VNRKM+ +AT+
Sbjct: 120 FTSKNVELLLKPLNLNHPVLSKTMLDKFAAVGILQGYLDFVNRKMKLKATE 170


>Glyma11g02590.1 
          Length = 167

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/161 (63%), Positives = 121/161 (75%), Gaps = 9/161 (5%)

Query: 40  MRFVQPLQLFHNLAKATQKERGRLIGLDVGDKYVGVALSDFDNKIASPFSVLIRKKSNIG 99
           MR+++PLQLFH+L     ++RGRL+GLDVGDKYVG+ALSDFDN IASPFSVL+RKK+NI 
Sbjct: 1   MRYMKPLQLFHDLK---NQQRGRLLGLDVGDKYVGLALSDFDNNIASPFSVLVRKKTNIT 57

Query: 100 LMASDFETLISKYSLKG--FVIGIPFNNFRVSPDAVQVKVLIDALSKTKKLEGL----NY 153
           L+ASDFE+L S  S K    VIGI F+  +VS DA+QVKV  D L KTK LEG+    N+
Sbjct: 58  LVASDFESLCSDLSNKTSKHVIGISFDKHQVSSDAMQVKVFTDHLCKTKMLEGVKKLKNW 117

Query: 154 TYWNECFTSQNVGLLLKPLNLNHPVHSKTILDKFAAVGILQ 194
                    +NV LLLKPLNLNH V SKT+LDKFAAVGILQ
Sbjct: 118 IEITGHIVHKNVELLLKPLNLNHSVLSKTMLDKFAAVGILQ 158