Miyakogusa Predicted Gene

Lj0g3v0306279.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0306279.1 tr|F4HV88|F4HV88_ARATH Ribosomal protein L18ae
family protein OS=Arabidopsis thaliana GN=At1g54217 P,59.38,2e-19,60S
RIBOSOMAL PROTEIN L18A-RELATED,NULL; 60S RIBOSOMAL PROTEIN
L18A,Ribosomal protein L18a; seg,NULL,CUFF.20635.1
         (96 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g00620.1                                                       129   6e-31
Glyma07g03960.1                                                       129   9e-31
Glyma17g06010.2                                                       108   2e-24
Glyma17g06010.1                                                       108   2e-24
Glyma15g18880.1                                                       107   3e-24
Glyma09g07680.1                                                       106   5e-24
Glyma13g16680.2                                                       105   1e-23
Glyma13g16680.1                                                       105   1e-23
Glyma10g24750.1                                                        53   9e-08

>Glyma16g00620.1 
          Length = 119

 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 60/70 (85%)

Query: 1  MDTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
          MDTAD+R GEY P RD E P LGKFDKPLPCFGCGIGWFS LLGF  PLMWYYATILYFG
Sbjct: 1  MDTADQRKGEYPPTRDTENPLLGKFDKPLPCFGCGIGWFSLLLGFVCPLMWYYATILYFG 60

Query: 61 NYYRKDPRER 70
          NYY KDPRER
Sbjct: 61 NYYHKDPRER 70


>Glyma07g03960.1 
          Length = 96

 Score =  129 bits (323), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 67/96 (69%)

Query: 1  MDTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
          MDTAD+R G+YAP RD E P LGKFDKPLPCFGCGIGWFS LLGF  P MWYYATILYFG
Sbjct: 1  MDTADQRKGKYAPTRDTENPLLGKFDKPLPCFGCGIGWFSLLLGFVCPPMWYYATILYFG 60

Query: 61 NYYRKDPRERXXXXXXXXXXXXXXXXVMITIFVIIL 96
          NYY KDPRER                 ++T+ VI L
Sbjct: 61 NYYHKDPRERAGLAASAIAALVFTIAAVVTVAVIFL 96


>Glyma17g06010.2 
          Length = 144

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 55/69 (79%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           DT     G+YA IRD E  Q+G +DKPLPCFGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 45  DTTGRGKGKYALIRDPEDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGN 104

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 105 HYRKDPRER 113


>Glyma17g06010.1 
          Length = 144

 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 55/69 (79%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           DT     G+YA IRD E  Q+G +DKPLPCFGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 45  DTTGRGKGKYALIRDPEDFQMGVYDKPLPCFGCGIGWFSFLFGFLCPPMWFYATILYFGN 104

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 105 HYRKDPRER 113


>Glyma15g18880.1 
          Length = 133

 Score =  107 bits (267), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 50/70 (71%), Positives = 53/70 (75%)

Query: 1   MDTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
           MD AD   G Y  IR  E  Q G +DKPLPC+GCGIGWFSFL GF  P +WYYATILYFG
Sbjct: 42  MDVADHEKGNYTLIRGPEDFQTGLYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFG 101

Query: 61  NYYRKDPRER 70
           NYYRKDPRER
Sbjct: 102 NYYRKDPRER 111


>Glyma09g07680.1 
          Length = 138

 Score =  106 bits (265), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/70 (70%), Positives = 53/70 (75%)

Query: 1   MDTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFG 60
           MD AD   G Y  I+  E  Q G +DKPLPC+GCGIGWFSFL GF  P +WYYATILYFG
Sbjct: 40  MDVADHEKGNYTLIKGPEDFQTGLYDKPLPCYGCGIGWFSFLFGFLCPPLWYYATILYFG 99

Query: 61  NYYRKDPRER 70
           NYYRKDPRER
Sbjct: 100 NYYRKDPRER 109


>Glyma13g16680.2 
          Length = 144

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 54/69 (78%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           D A    G+YA IRD E+ Q G +DKPLP FGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 45  DAAGHGKGKYALIRDPEVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGN 104

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 105 HYRKDPRER 113


>Glyma13g16680.1 
          Length = 144

 Score =  105 bits (262), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 49/69 (71%), Positives = 54/69 (78%)

Query: 2   DTADERNGEYAPIRDLEIPQLGKFDKPLPCFGCGIGWFSFLLGFAFPLMWYYATILYFGN 61
           D A    G+YA IRD E+ Q G +DKPLP FGCGIGWFSFL GF  P MW+YATILYFGN
Sbjct: 45  DAAGHGKGKYALIRDPEVFQTGVYDKPLPFFGCGIGWFSFLFGFLCPPMWFYATILYFGN 104

Query: 62  YYRKDPRER 70
           +YRKDPRER
Sbjct: 105 HYRKDPRER 113


>Glyma10g24750.1 
          Length = 50

 Score = 52.8 bits (125), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 24/31 (77%), Positives = 25/31 (80%)

Query: 39 FSFLLGFAFPLMWYYATILYFGNYYRKDPRE 69
          F  L GF  P +WYYATILYFGNYYRKDPRE
Sbjct: 20 FKILFGFLCPPLWYYATILYFGNYYRKDPRE 50