Miyakogusa Predicted Gene

Lj0g3v0305089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0305089.1 tr|G7JK31|G7JK31_MEDTR Replication protein A 70
kDa DNA-binding subunit OS=Medicago truncatula
GN=MT,24.83,1e-18,DUF223,Domain of unknown function DUF223;
REPLICATION FACTOR A 1, RFA1,NULL; Nucleic acid-binding
pr,CUFF.20527.1
         (285 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g33200.1                                                        64   2e-10
Glyma11g27090.1                                                        60   3e-09
Glyma17g08660.1                                                        50   3e-06
Glyma17g08660.2                                                        50   3e-06
Glyma08g33820.1                                                        49   6e-06
Glyma05g00370.1                                                        49   7e-06
Glyma02g31380.1                                                        49   7e-06
Glyma07g33700.1                                                        49   8e-06
Glyma05g00370.2                                                        49   8e-06

>Glyma18g33200.1 
          Length = 126

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 60/109 (55%), Gaps = 9/109 (8%)

Query: 21  LVRVIRFWTIR---VGGQTTE------IDMILMDDKGSRIQATVNKHIATKYDKLIREGA 71
           +VRV+  W +       QT+       ++M+L+D KG R+  +V +    K+DK ++EG 
Sbjct: 1   MVRVVHLWMVSDVSNNKQTSSSKIPLSMEMVLVDSKGDRVHGSVKQTFIYKFDKALQEGK 60

Query: 72  VYAIQNFTLANNTGGFKVADHEYKITIQGETIALLQYDSLVPATIWNSV 120
            Y+IQ F +A N G ++   H+YKI  Q  T   L  ++ +P ++++ V
Sbjct: 61  WYSIQFFGVAENGGIYRTTHHKYKIVFQYSTKVALVDNASIPNSMYDFV 109


>Glyma11g27090.1 
          Length = 206

 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 65/114 (57%), Gaps = 5/114 (4%)

Query: 8   IASLNPIRDNWNILVRVIRFWTIRVGGQTTEIDMILMDDKGSRIQATVNKHIATKYDKLI 67
           IA ++  ++   I+VRVI  WTI    ++  +++IL+D KG +I A + +++  + D +I
Sbjct: 4   IAEIDDQKETCKIIVRVINMWTIPRSPKSI-VELILVDKKGDKILAQM-RNVDVQLDNVI 61

Query: 68  RE-GAVYAIQNFTLANNTGGFKVADHEYKITIQGETIALLQYDSLVPATIWNSV 120
            + G  Y I+NF +  N+G +K   H +KI     T  LL   S++  T+W S+
Sbjct: 62  FDVGHTYVIKNFEVEKNSGHYKATRHGFKINFVKTTKMLLV--SIMSCTLWESL 113


>Glyma17g08660.1 
          Length = 619

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 8   IASLNPIRDNWNILVRVIRFWTIR----VGGQTTEIDMILMDDKGSRIQATVNKHIATK- 62
           + SLNP + NW I V V     +R      G     ++ L D+ G++IQAT+  + A K 
Sbjct: 177 LVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKF 236

Query: 63  YDKLIREGAVYAIQNFTLANNTGGFKVADHEYKITI--QGETIALLQYDSLVPATIWNSV 120
           YDK I  G VY I   TL      FK   ++Y++T+    E   +    S VP T +N V
Sbjct: 237 YDKFIL-GRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFV 295

Query: 121 KF 122
           + 
Sbjct: 296 QI 297


>Glyma17g08660.2 
          Length = 527

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 8/122 (6%)

Query: 8   IASLNPIRDNWNILVRVIRFWTIR----VGGQTTEIDMILMDDKGSRIQATVNKHIATK- 62
           + SLNP + NW I V V     +R      G     ++ L D+ G++IQAT+  + A K 
Sbjct: 177 LVSLNPYQGNWTIKVSVTSKGNMRNYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKF 236

Query: 63  YDKLIREGAVYAIQNFTLANNTGGFKVADHEYKITI--QGETIALLQYDSLVPATIWNSV 120
           YDK I  G VY I   TL      FK   ++Y++T+    E   +    S VP T +N V
Sbjct: 237 YDKFIL-GRVYYISKGTLKVANKQFKTVQNDYEMTLNENSEVEEVAGEASFVPETKFNFV 295

Query: 121 KF 122
           + 
Sbjct: 296 QI 297


>Glyma08g33820.1 
          Length = 292

 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 10/119 (8%)

Query: 166 GVELTCSFWGHYVDEIDRYLSTNDPTNVVVVIMC-GKIKEFQGK--RSIQNMLHCCKIMF 222
           G  L+C+ W +Y  +   Y++       +V+I+   +IK+ QG    S+ N     K++ 
Sbjct: 8   GEVLSCTLWENYCMQFLAYMNERGNDGPIVIILTHARIKDAQGSYPASVSNSFKASKLLI 67

Query: 223 NPTILVALEFKESMAQQN-------PSLQQGVGHIVDASQVSLKDDFLNLHERKTLSDL 274
           N  IL   EF+E +           P   QG   +  A Q+S KD FL+  E KT+S +
Sbjct: 68  NEPILEIKEFRERLLDLGVEVNLVLPPGDQGSSQLSGAIQLSSKDAFLSKAEAKTISKI 126


>Glyma05g00370.1 
          Length = 708

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 8/121 (6%)

Query: 8   IASLNPIRDNWNILVRVIRFWTIR----VGGQTTEIDMILMDDKGSRIQATVNKHIATK- 62
           + SLNP + NW I V V     +R      G     ++ L D+ G++IQAT+  + A K 
Sbjct: 178 LVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKF 237

Query: 63  YDKLIREGAVYAIQNFTLANNTGGFKVADHEYKITI--QGETIALLQYDSLVPATIWNSV 120
           +DK +  G VY I   TL      FK   ++Y++T+    E   ++   S VP T +N V
Sbjct: 238 FDKFVL-GKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFV 296

Query: 121 K 121
           +
Sbjct: 297 Q 297


>Glyma02g31380.1 
          Length = 294

 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 9/95 (9%)

Query: 193 VVVVIMCGKIKEFQGKR--SIQNMLHCCKIMFNPTILVALEFKESM----AQQNPSL--- 243
           +++++   +IK+ QG    S+ N     K++ N  +L   EF+E +     + NP L   
Sbjct: 19  IIIILTHARIKDAQGSNPASVSNSFKASKLLINEPVLEIQEFRERLLDLGVEVNPVLPPG 78

Query: 244 QQGVGHIVDASQVSLKDDFLNLHERKTLSDLKDLA 278
            QG   +  ASQ+SLKD FL+  E KT+S++  ++
Sbjct: 79  DQGSSQLSGASQLSLKDAFLSKAEAKTISEINGIS 113


>Glyma07g33700.1 
          Length = 311

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 10/129 (7%)

Query: 160 IVLNSFGVELTCSFWGHYVDEIDRYLSTNDPTNVVVVIMC-GKIKEFQGK--RSIQNMLH 216
           + L   G  L+C+ W +Y  +   YL+       +V+I+   +IK+ QG    S+ N   
Sbjct: 2   LFLCCSGEVLSCTLWENYCMQFLAYLNERGNDGPIVIILTHARIKDAQGSYLASVSNSFK 61

Query: 217 CCKIMFNPTILVALEFKESMAQQN-------PSLQQGVGHIVDASQVSLKDDFLNLHERK 269
             K++ N  IL   EF+E +           P   QG   +   SQ+S KD FL+  E K
Sbjct: 62  ASKLLINEPILEIQEFRERLLDLGVKVSPVLPPGDQGSSQLSRGSQLSSKDAFLSKVEAK 121

Query: 270 TLSDLKDLA 278
           T+ ++  ++
Sbjct: 122 TIYEINGIS 130


>Glyma05g00370.2 
          Length = 620

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 8   IASLNPIRDNWNILVRVIRFWTIR----VGGQTTEIDMILMDDKGSRIQATVNKHIATK- 62
           + SLNP + NW I V V     +R      G     ++ L D+ G++IQAT+  + A K 
Sbjct: 178 LVSLNPYQGNWTIKVSVTSKGNMRTYKNARGDGCVFNVELTDEDGTQIQATMFNNAARKF 237

Query: 63  YDKLIREGAVYAIQNFTLANNTGGFKVADHEYKITI--QGETIALLQYDSLVPATIWNSV 120
           +DK +  G VY I   TL      FK   ++Y++T+    E   ++   S VP T +N V
Sbjct: 238 FDKFVL-GKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVVGEASFVPETKFNFV 296

Query: 121 KF 122
           + 
Sbjct: 297 QI 298