Miyakogusa Predicted Gene

Lj0g3v0304209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304209.1 Non Chatacterized Hit- tr|B8B9N6|B8B9N6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,95.65,0.0001,Ribosomal_L1,Ribosomal protein L1; 60S RIBOSOMAL
PROTEIN L10A,NULL; RIBOSOMAL PROTEIN L7AE FAMILY ME,CUFF.20466.1
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g39270.2                                                       186   5e-48
Glyma13g39270.1                                                       186   5e-48
Glyma12g31040.2                                                       186   5e-48
Glyma12g31040.1                                                       186   5e-48
Glyma11g35450.1                                                       184   2e-47
Glyma11g35450.2                                                       183   4e-47
Glyma11g35450.4                                                       182   5e-47
Glyma11g35450.3                                                       182   5e-47
Glyma19g37980.2                                                       182   5e-47
Glyma19g37980.1                                                       182   5e-47
Glyma18g02970.1                                                       179   4e-46
Glyma19g03640.1                                                       140   2e-34
Glyma15g40520.1                                                        47   5e-06

>Glyma13g39270.2 
          Length = 216

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLE+KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Glyma13g39270.1 
          Length = 216

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLE+KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Glyma12g31040.2 
          Length = 216

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLE+KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Glyma12g31040.1 
          Length = 216

 Score =  186 bits (472), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 92/97 (94%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLE+KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Glyma11g35450.1 
          Length = 264

 Score =  184 bits (466), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/94 (95%), Positives = 94/94 (100%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE+LE+KVNE+KAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVST 96
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVS+
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSS 202


>Glyma11g35450.2 
          Length = 204

 Score =  183 bits (464), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/96 (93%), Positives = 94/96 (97%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE+LE+KVNE+KAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLL 98
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVS  +
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSACI 204


>Glyma11g35450.4 
          Length = 216

 Score =  182 bits (463), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 97/105 (92%), Gaps = 1/105 (0%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE+LE+KVNE+KAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTL-LIFELNHCF 106
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV  L L   +  C+
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKCY 213


>Glyma11g35450.3 
          Length = 216

 Score =  182 bits (463), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 92/105 (87%), Positives = 97/105 (92%), Gaps = 1/105 (0%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE+LE+KVNE+KAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTL-LIFELNHCF 106
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV  L L   +  C+
Sbjct: 169 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKCY 213


>Glyma19g37980.2 
          Length = 216

 Score =  182 bits (463), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLE+KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN +MEEKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Glyma19g37980.1 
          Length = 216

 Score =  182 bits (463), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLE+KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GN +MEEKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNCTMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Glyma18g02970.1 
          Length = 209

 Score =  179 bits (455), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 92/92 (100%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE+LE+KVNE+KAMVKFQLKKVLCMGVAV
Sbjct: 93  FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQETLESKVNESKAMVKFQLKKVLCMGVAV 152

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV 94
           GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV
Sbjct: 153 GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV 184


>Glyma19g03640.1 
          Length = 117

 Score =  140 bits (354), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 78/91 (85%)

Query: 4   LASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVG 63
            ASEAVIKQ     G    ++  FPTLVTHQE+LE+KVNE+KAMVKFQLKK LCMGVAVG
Sbjct: 27  FASEAVIKQDSSPFGSWSQQSKHFPTLVTHQETLESKVNESKAMVKFQLKKELCMGVAVG 86

Query: 64  NVSMEEKQIFQNVQLSVNFLVSLLKKNWQNV 94
           NV+MEEKQIFQNVQLSVNFLVSLLKKNWQN+
Sbjct: 87  NVNMEEKQIFQNVQLSVNFLVSLLKKNWQNM 117


>Glyma15g40520.1 
          Length = 390

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQE-SLEAKVNETKAMVKFQLKKVLCMGVA 61
           F A ++++  +PRLLG    K  K P  V  ++ S + +V    +     ++   C  V 
Sbjct: 130 FFAEKSIVPLLPRLLGKSFFKKRKIPVPVDLKKGSWKEQVERACSSAMLFMRTGTCSVVR 189

Query: 62  VGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTL 97
           V  V ME  +I +NV  ++  +V ++ K W NV +L
Sbjct: 190 VAKVRMERDEIVENVVAAIEGIVEVVPKKWGNVRSL 225