Miyakogusa Predicted Gene

Lj0g3v0303699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303699.1 tr|B9I7G5|B9I7G5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_894812 PE=4
SV=1,56.25,7e-19,PPR,Pentatricopeptide repeat; PPR: pentatricopeptide
repeat domain,Pentatricopeptide repeat; PENTATR,CUFF.20422.1
         (110 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g34220.1                                                       174   2e-44
Glyma06g41970.1                                                        93   5e-20
Glyma0080s00220.1                                                      62   2e-10

>Glyma12g34220.1 
          Length = 680

 Score =  174 bits (441), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/99 (80%), Positives = 90/99 (90%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTIHHYNLESNDETFRRMIDLFMKMKD 60
           MCEAGLTLST+VLHSILQICD+ SEYNLVHR+FSTIH YNLESNDETFR MIDLF+KMKD
Sbjct: 335 MCEAGLTLSTKVLHSILQICDDTSEYNLVHRIFSTIHRYNLESNDETFRSMIDLFLKMKD 394

Query: 61  FEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
            EGAY+MLDDL  +N+ P+ GMYNAI+ ECFRE+NISDG
Sbjct: 395 IEGAYKMLDDLGKLNLKPSPGMYNAILEECFREKNISDG 433


>Glyma06g41970.1 
          Length = 82

 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 57/78 (73%)

Query: 28  LVHRVFSTIHHYNLESNDETFRRMIDLFMKMKDFEGAYRMLDDLKGMNMVPTTGMYNAIM 87
           +VHR++S I  Y+LE N E  RR++  F++MKDFEGAYRM+ DL+ MN  PTT MYNAIM
Sbjct: 1   MVHRIYSIICRYHLELNGEICRRLVHFFVRMKDFEGAYRMIADLEDMNFKPTTNMYNAIM 60

Query: 88  AECFRERNISDGGGSLNK 105
           A  FRE+NI  G   LN+
Sbjct: 61  AGYFREKNIRGGLRVLNQ 78


>Glyma0080s00220.1 
          Length = 78

 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query: 58 MKDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNIS 97
          MKDFEGA+RM+ DL+ MN  PTT +YNAIMA  FRE+NIS
Sbjct: 1  MKDFEGAFRMIADLEDMNFKPTTNVYNAIMAGYFREKNIS 40