Miyakogusa Predicted Gene

Lj0g3v0302969.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0302969.1 Non Chatacterized Hit- tr|K3Y7Y3|K3Y7Y3_SETIT
Uncharacterized protein OS=Setaria italica GN=Si010324,36.84,2e-19,no
description,Pseudouridine synthase I, TruA,
C-terminal,gene.g23583.t1.1
         (135 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g00480.1                                                       164   2e-41
Glyma12g28830.3                                                       162   6e-41
Glyma12g28830.2                                                       162   6e-41
Glyma12g28830.1                                                       160   5e-40

>Glyma16g00480.1 
          Length = 370

 Score =  164 bits (416), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 104/177 (58%), Gaps = 60/177 (33%)

Query: 16  YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------------AKSPIR 54
           YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ                     AKSPIR
Sbjct: 172 YFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIR 231

Query: 55  TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPLT-------------- 100
           TLDELSV+EVI SP FPSLMDRE+ NKVSGD + C   SE DIP T              
Sbjct: 232 TLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQD 291

Query: 101 -------------------------VRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
                                    VRLLVGVLKAVGTGNLTIPDVERILNA+TV+ 
Sbjct: 292 VGFGKRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTA 348


>Glyma12g28830.3 
          Length = 368

 Score =  162 bits (411), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 104/188 (55%), Gaps = 60/188 (31%)

Query: 5   WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------- 48
           +  R       YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ                
Sbjct: 159 FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFR 218

Query: 49  -----AKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIP----- 98
                AKSPIRTLDELSV+EVI SP FPSLMDRE+ NKVSGD + C   +E DIP     
Sbjct: 219 AAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNP 278

Query: 99  ----------------------------------LTVRLLVGVLKAVGTGNLTIPDVERI 124
                                               VRLLVGVLKA GTGNLTIPDVERI
Sbjct: 279 SIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERI 338

Query: 125 LNAKTVST 132
           LNAKTV+ 
Sbjct: 339 LNAKTVTA 346


>Glyma12g28830.2 
          Length = 369

 Score =  162 bits (411), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/188 (50%), Positives = 104/188 (55%), Gaps = 60/188 (31%)

Query: 5   WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------- 48
           +  R       YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ                
Sbjct: 160 FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFR 219

Query: 49  -----AKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIP----- 98
                AKSPIRTLDELSV+EVI SP FPSLMDRE+ NKVSGD + C   +E DIP     
Sbjct: 220 AAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNP 279

Query: 99  ----------------------------------LTVRLLVGVLKAVGTGNLTIPDVERI 124
                                               VRLLVGVLKA GTGNLTIPDVERI
Sbjct: 280 SIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERI 339

Query: 125 LNAKTVST 132
           LNAKTV+ 
Sbjct: 340 LNAKTVTA 347


>Glyma12g28830.1 
          Length = 529

 Score =  160 bits (404), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/197 (48%), Positives = 104/197 (52%), Gaps = 69/197 (35%)

Query: 5   WFERLSTISYRYFYRLLSGPEPLSAFEKERAWHVPEDLNLSAMQ---------------- 48
           +  R       YFYRLLSGPEPLS FEK+RAWHVPE+L+L AMQ                
Sbjct: 311 FHARFKAQERTYFYRLLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFR 370

Query: 49  -----AKSPIRTLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIP----- 98
                AKSPIRTLDELSV+EVI SP FPSLMDRE+ NKVSGD + C   +E DIP     
Sbjct: 371 AAGCQAKSPIRTLDELSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNP 430

Query: 99  -------------------------------------------LTVRLLVGVLKAVGTGN 115
                                                        VRLLVGVLKA GTGN
Sbjct: 431 SIDKVITSSQDAGFGKRRRHRCLVVTARARSFLYHQVGYSFLYHQVRLLVGVLKAAGTGN 490

Query: 116 LTIPDVERILNAKTVST 132
           LTIPDVERILNAKTV+ 
Sbjct: 491 LTIPDVERILNAKTVTA 507