Miyakogusa Predicted Gene
- Lj0g3v0301719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0301719.1 tr|B9HQ41|B9HQ41_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_648978 PE=4
SV=1,68.95,0,seg,NULL; UBA,Ubiquitin-associated/translation elongation
factor EF1B, N-terminal, eukaryote; OTU,Ov,CUFF.20271.1
(517 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma11g18720.2 578 e-165
Glyma12g09700.1 565 e-161
Glyma11g18720.4 559 e-159
Glyma11g18720.3 559 e-159
Glyma11g18720.1 559 e-159
Glyma03g36860.1 55 2e-07
Glyma19g39500.1 55 2e-07
Glyma13g10660.1 54 4e-07
Glyma10g12180.1 54 6e-07
Glyma20g32220.1 53 1e-06
>Glyma11g18720.2
Length = 519
Score = 578 bits (1490), Expect = e-165, Method: Compositional matrix adjust.
Identities = 304/431 (70%), Positives = 324/431 (75%), Gaps = 10/431 (2%)
Query: 93 DVKEDVADGQELARGFSGERTVLENEGLVGDSP--IVAGGSSHXXXXXXXXXXXSAT-NL 149
DV+E++ G R GER V E+E GDS +V GG S S T NL
Sbjct: 93 DVREEIVKGLSGLR--VGERVVSESEVSSGDSSSLLVGGGGSCPPPPPVPPPKPSVTGNL 150
Query: 150 NSRRNVSGTSN---VGSPRRASQWPVVXXXXXXXXXXXXXXXXHNESEGYNSADEQNPCL 206
N RR+VSG+ N VGS RRA WPVV HNESEGYNSADEQ PCL
Sbjct: 151 NPRRSVSGSLNSGIVGSSRRA--WPVVSARTSPAGSRPSSPRSHNESEGYNSADEQKPCL 208
Query: 207 VSSYGDLERERQFEIDIRRAKGYEVKRMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDY 266
VSSY D ERERQFEIDIRRAKGYEVK+MMEDGNCLFRAVADQVYGDSE+YDLVRQMCIDY
Sbjct: 209 VSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSEVYDLVRQMCIDY 268
Query: 267 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTFH 326
MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAM EMYNRPIHIYSY+TEPIN FH
Sbjct: 269 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFH 328
Query: 327 GGYNTDTPPVRLSYHHGNHYNSLVDPRRPTIGAGLGFSSLRGANVDRXXXXXXXXXXXXX 386
G YNTDTPP+RLSYHHGNHYNSLVDPRR TIGAGLGFSSLRG NVD+
Sbjct: 329 GSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDKVKAAIKAQQDQ 388
Query: 387 XXXNALLAEGRFYSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKEXXXXXXXXXXX 446
NALLAEGRFYSDLELTEKEIER VIE SRAEY+A+ FK QLG +E
Sbjct: 389 QINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSAFKQQLGNRESSTSNAEPSSS 448
Query: 447 GARSSGRDPKMEPVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLETG 506
GARSSG D K E +E+ S LS MQM+LSMGFSY+QAIEAYSIFGDDVDSM+CYLLETG
Sbjct: 449 GARSSGTDRKTEHGREHGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDVDSMVCYLLETG 508
Query: 507 SSSRRKGKATE 517
SSSRRKGKATE
Sbjct: 509 SSSRRKGKATE 519
>Glyma12g09700.1
Length = 519
Score = 565 bits (1456), Expect = e-161, Method: Compositional matrix adjust.
Identities = 299/431 (69%), Positives = 321/431 (74%), Gaps = 8/431 (1%)
Query: 93 DVKEDVADGQELARGFSGERTVLENEGLVGDSP--IVAGGSSHXXXXXXXXXXXSATNLN 150
DV+E++ G R GER V E+EG GDS +V GGS NLN
Sbjct: 91 DVREEIVKGLSGLR--VGERVVSESEGSSGDSSSLLVGGGSCPPPPPVPPPKPSVTGNLN 148
Query: 151 SRRNVSGTSN---VGSPRRASQWPVVXXXXXXXXXXXXXXXXHNESEGYNSADEQNPCLV 207
SRR+V+G+ N VGS RRA WP+V HNESEGYNSADEQ PCLV
Sbjct: 149 SRRSVAGSLNSGSVGSSRRAVTWPIVSARTSPAGSRPSSPRSHNESEGYNSADEQKPCLV 208
Query: 208 SSYGDLERERQFEIDIRRAKGYEVKRMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDYM 267
SSY D ERERQFEIDIRRAKGYEVK+MMEDGNCLFRAVADQVYGDSE+YDL+RQMCIDYM
Sbjct: 209 SSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSEVYDLIRQMCIDYM 268
Query: 268 ERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTFHG 327
ERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAM EMYNRPIHIYSY+TEPIN FHG
Sbjct: 269 ERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFHG 328
Query: 328 GYNTDTPPVRLSYHHGNHYNSLVDPRRPTIGAGLGFSSLRGANVDRXXXXXXXXXXXXXX 387
YNTD PP+RLSYHHGNHYNSLVDPRR TIGAGLGFSSLRG NVD+
Sbjct: 329 SYNTDMPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDQVKAAIKAQQDKQ 388
Query: 388 XXNALLAEGRFYSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKEXXXXXXX-XXXX 446
NALLAEGRFYSDLELTEKEIER VIE SRAEY+A+ TFK QLG +E
Sbjct: 389 INNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSTFKQQLGDRESSTSNAEPSSSG 448
Query: 447 GARSSGRDPKMEPVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLETG 506
SSG D K E KE+ S LS MQM+LSMGFSY+QAIEAYSIFGDDVDSM+CYLLETG
Sbjct: 449 ATGSSGTDRKTEHGKEHGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDVDSMVCYLLETG 508
Query: 507 SSSRRKGKATE 517
SSSRRKGKATE
Sbjct: 509 SSSRRKGKATE 519
>Glyma11g18720.4
Length = 520
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 301/432 (69%), Positives = 321/432 (74%), Gaps = 11/432 (2%)
Query: 93 DVKEDVADGQELARGFSGERTVLENEGLVGDSP--IVAGGSSHXXXXXXXXXXXSAT-NL 149
DV+E++ G R GER V E+E GDS +V GG S S T NL
Sbjct: 93 DVREEIVKGLSGLR--VGERVVSESEVSSGDSSSLLVGGGGSCPPPPPVPPPKPSVTGNL 150
Query: 150 NSRRNVSGTSN---VGSPRRASQWPVVXXXXXXXXXXXXXXXXHNESEGYNSADEQNPCL 206
N RR+VSG+ N VGS RRA WPVV HNESEGYNSADEQ PCL
Sbjct: 151 NPRRSVSGSLNSGIVGSSRRA--WPVVSARTSPAGSRPSSPRSHNESEGYNSADEQKPCL 208
Query: 207 VSSYGDLERERQFEIDIRRAKGYEVKRMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDY 266
VSSY D ERERQFEIDIRRAKGYEVK+MMEDGNCLFRAVADQVYGDSE+YDLVRQMCIDY
Sbjct: 209 VSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSEVYDLVRQMCIDY 268
Query: 267 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTFH 326
MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAM EMYNRPIHIYSY+TEPIN FH
Sbjct: 269 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFH 328
Query: 327 GGYNTDTPPVRLSYHHGNHYNSLVDPRRPTIGAGLGFSSLRGANVDRXXXXXXXXXXXXX 386
G YNTDTPP+RLSYHHGNHYNSLVDPRR TIGAGLGFSSLRG NVD+
Sbjct: 329 GSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDKVKAAIKAQQDQ 388
Query: 387 XXXNALLAEGRFYSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKEXXXXXXX-XXX 445
NALLAEGRFYSDLELTEKEIER VIE SRAEY+A+ FK QLG +E
Sbjct: 389 QINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSAFKQQLGNRESSTSNAEPSSS 448
Query: 446 XGARSSGRDPKMEPVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLET 505
SSG D K E +E+ S LS MQM+LSMGFSY+QAIEAYSIFGDDVDSM+CYLLET
Sbjct: 449 GATGSSGTDRKTEHGREHGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDVDSMVCYLLET 508
Query: 506 GSSSRRKGKATE 517
GSSSRRKGKATE
Sbjct: 509 GSSSRRKGKATE 520
>Glyma11g18720.3
Length = 520
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 301/432 (69%), Positives = 321/432 (74%), Gaps = 11/432 (2%)
Query: 93 DVKEDVADGQELARGFSGERTVLENEGLVGDSP--IVAGGSSHXXXXXXXXXXXSAT-NL 149
DV+E++ G R GER V E+E GDS +V GG S S T NL
Sbjct: 93 DVREEIVKGLSGLR--VGERVVSESEVSSGDSSSLLVGGGGSCPPPPPVPPPKPSVTGNL 150
Query: 150 NSRRNVSGTSN---VGSPRRASQWPVVXXXXXXXXXXXXXXXXHNESEGYNSADEQNPCL 206
N RR+VSG+ N VGS RRA WPVV HNESEGYNSADEQ PCL
Sbjct: 151 NPRRSVSGSLNSGIVGSSRRA--WPVVSARTSPAGSRPSSPRSHNESEGYNSADEQKPCL 208
Query: 207 VSSYGDLERERQFEIDIRRAKGYEVKRMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDY 266
VSSY D ERERQFEIDIRRAKGYEVK+MMEDGNCLFRAVADQVYGDSE+YDLVRQMCIDY
Sbjct: 209 VSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSEVYDLVRQMCIDY 268
Query: 267 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTFH 326
MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAM EMYNRPIHIYSY+TEPIN FH
Sbjct: 269 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFH 328
Query: 327 GGYNTDTPPVRLSYHHGNHYNSLVDPRRPTIGAGLGFSSLRGANVDRXXXXXXXXXXXXX 386
G YNTDTPP+RLSYHHGNHYNSLVDPRR TIGAGLGFSSLRG NVD+
Sbjct: 329 GSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDKVKAAIKAQQDQ 388
Query: 387 XXXNALLAEGRFYSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKEXXXXXXX-XXX 445
NALLAEGRFYSDLELTEKEIER VIE SRAEY+A+ FK QLG +E
Sbjct: 389 QINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSAFKQQLGNRESSTSNAEPSSS 448
Query: 446 XGARSSGRDPKMEPVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLET 505
SSG D K E +E+ S LS MQM+LSMGFSY+QAIEAYSIFGDDVDSM+CYLLET
Sbjct: 449 GATGSSGTDRKTEHGREHGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDVDSMVCYLLET 508
Query: 506 GSSSRRKGKATE 517
GSSSRRKGKATE
Sbjct: 509 GSSSRRKGKATE 520
>Glyma11g18720.1
Length = 520
Score = 559 bits (1440), Expect = e-159, Method: Compositional matrix adjust.
Identities = 301/432 (69%), Positives = 321/432 (74%), Gaps = 11/432 (2%)
Query: 93 DVKEDVADGQELARGFSGERTVLENEGLVGDSP--IVAGGSSHXXXXXXXXXXXSAT-NL 149
DV+E++ G R GER V E+E GDS +V GG S S T NL
Sbjct: 93 DVREEIVKGLSGLR--VGERVVSESEVSSGDSSSLLVGGGGSCPPPPPVPPPKPSVTGNL 150
Query: 150 NSRRNVSGTSN---VGSPRRASQWPVVXXXXXXXXXXXXXXXXHNESEGYNSADEQNPCL 206
N RR+VSG+ N VGS RRA WPVV HNESEGYNSADEQ PCL
Sbjct: 151 NPRRSVSGSLNSGIVGSSRRA--WPVVSARTSPAGSRPSSPRSHNESEGYNSADEQKPCL 208
Query: 207 VSSYGDLERERQFEIDIRRAKGYEVKRMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDY 266
VSSY D ERERQFEIDIRRAKGYEVK+MMEDGNCLFRAVADQVYGDSE+YDLVRQMCIDY
Sbjct: 209 VSSYDDFERERQFEIDIRRAKGYEVKKMMEDGNCLFRAVADQVYGDSEVYDLVRQMCIDY 268
Query: 267 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTFH 326
MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAM EMYNRPIHIYSY+TEPIN FH
Sbjct: 269 MERERDHFSQFITEGFTSYCKRKRRDKVYGNNVEIQAMCEMYNRPIHIYSYTTEPINIFH 328
Query: 327 GGYNTDTPPVRLSYHHGNHYNSLVDPRRPTIGAGLGFSSLRGANVDRXXXXXXXXXXXXX 386
G YNTDTPP+RLSYHHGNHYNSLVDPRR TIGAGLGFSSLRG NVD+
Sbjct: 329 GSYNTDTPPIRLSYHHGNHYNSLVDPRRLTIGAGLGFSSLRGTNVDKDKVKAAIKAQQDQ 388
Query: 387 XXXNALLAEGRFYSDLELTEKEIERAVIEASRAEYIANDTFKHQLGYKEXXXXXXX-XXX 445
NALLAEGRFYSDLELTEKEIER VIE SRAEY+A+ FK QLG +E
Sbjct: 389 QINNALLAEGRFYSDLELTEKEIERMVIEVSRAEYLADSAFKQQLGNRESSTSNAEPSSS 448
Query: 446 XGARSSGRDPKMEPVKENDSGLSWSMQMVLSMGFSYLQAIEAYSIFGDDVDSMICYLLET 505
SSG D K E +E+ S LS MQM+LSMGFSY+QAIEAYSIFGDDVDSM+CYLLET
Sbjct: 449 GATGSSGTDRKTEHGREHGSDLSSGMQMLLSMGFSYMQAIEAYSIFGDDVDSMVCYLLET 508
Query: 506 GSSSRRKGKATE 517
GSSSRRKGKATE
Sbjct: 509 GSSSRRKGKATE 520
>Glyma03g36860.1
Length = 276
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 65/155 (41%), Gaps = 35/155 (22%)
Query: 228 GYEVKRMMEDGNCLFRAVADQVY----GDSE-LYDLVRQMCIDYMERERDHFSQFI---- 278
G V + DG+CL+RAV DQ+ G S Y +R+M YM R+H S F+
Sbjct: 123 GLTVCEIKPDGHCLYRAVEDQLALLSGGRSPYTYQDLREMVAAYM---RNHTSDFLPFFL 179
Query: 279 -------------TEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTF 325
+ F +YCK +G +E+ A++ + I I+S S +
Sbjct: 180 SENLIEDDSDESPAQKFENYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMG 239
Query: 326 H-----GGYNTDTPPVRLSYHH-----GNHYNSLV 350
GG + LSYH G HYNS+V
Sbjct: 240 KEYKSDGGAGMSNLSIMLSYHKHAFGLGEHYNSVV 274
>Glyma19g39500.1
Length = 324
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 35/155 (22%)
Query: 228 GYEVKRMMEDGNCLFRAVADQVY----GDSE-LYDLVRQMCIDYMERERDHFSQFI---- 278
G V + DG+CL+RA+ DQ+ G S Y +R+M YM R+H S F+
Sbjct: 171 GLTVCEIKPDGHCLYRAIEDQLAILSGGRSPYTYQELREMVAAYM---RNHTSDFLPFFL 227
Query: 279 -------------TEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTF 325
+ F +YCK +G +E+ A++ + I I+S S +
Sbjct: 228 SENLIEDDSNESFAQKFENYCKEVESTATWGGQLELGALTHCLKKHIMIFSGSFPDVEMG 287
Query: 326 H-----GGYNTDTPPVRLSYHH-----GNHYNSLV 350
GG + LSYH G HYNS+V
Sbjct: 288 KEYKSDGGTGLSNSSIMLSYHKHAFGLGEHYNSVV 322
>Glyma13g10660.1
Length = 161
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 46/74 (62%)
Query: 233 RMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDYMERERDHFSQFITEGFTSYCKRKRRD 292
+M DGNC FRA+ADQ++G+ + + VR+ I ++ + + ++ + SY K+ ++
Sbjct: 87 QMEGDGNCQFRALADQLFGNPDYHKHVRRQVIKQLKHHKKLYEGYVPMEYKSYLKKMKKS 146
Query: 293 KVYGNNVEIQAMSE 306
+G++V +QA ++
Sbjct: 147 GEWGDHVTLQAAAD 160
>Glyma10g12180.1
Length = 339
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/142 (28%), Positives = 61/142 (42%), Gaps = 17/142 (11%)
Query: 229 YEVKRMMEDGNCLFRAVADQVYGDS-----------ELYDLVRQMCIDYMERERDHFSQF 277
Y V + DG CLFR+VA S EL D +R D + ++ F
Sbjct: 192 YSVIGIPGDGRCLFRSVARGACLRSGKPPPNESIQRELADDLRARVADEFIKRKEETEWF 251
Query: 278 ITEGFTSYCKRKRRDKVYGNNVEIQAMSEMYNRPIHIYSYSTEP-----INTFHGGYNTD 332
+ F +Y + R+ V+G E+ S + PI +Y Y + I + Y +
Sbjct: 252 VEGDFDTYVSQIRKPHVWGGEPELFIASHVLQMPITVYMYDKDAGGLISIAEYGQEYGKE 311
Query: 333 TPPVRLSYHHGNHYNSLVDPRR 354
P+R+ YH HY++L PRR
Sbjct: 312 N-PIRVLYHGFGHYDALEIPRR 332
>Glyma20g32220.1
Length = 362
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 59/125 (47%), Gaps = 15/125 (12%)
Query: 233 RMMEDGNCLFRAVADQVYGDSELYDLVRQMCIDYMERERDHFSQFITEGFTSYCKRKRRD 292
++ DGNC FR+++DQ+Y + + VRQ + ++ D ++ ++ + Y K +
Sbjct: 223 KVQGDGNCQFRSLSDQLYRSPDHHKFVRQQIVQQLKSYPDLYAGYVPMAYIDYLKNMSKS 282
Query: 293 KVYGNNVEIQAMSEMYNRPIHIYSYSTEPINTFHGGYNTDTPP--------VRLSYHHGN 344
+G++V +QA ++ Y I + I +F + P + LS+
Sbjct: 283 GEWGDHVTLQAAADWYGVKIFV-------ITSFKDTCYIEILPQIQKSGRVIFLSFWAEV 335
Query: 345 HYNSL 349
HYNS+
Sbjct: 336 HYNSI 340