Miyakogusa Predicted Gene

Lj0g3v0301409.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0301409.3 tr|G7J9L8|G7J9L8_MEDTR Mediator of RNA polymerase
II transcription subunit OS=Medicago truncatula GN,82.98,0,seg,NULL;
MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 13,NULL; FAMILY
NOT NAMED,NULL; Med13_,CUFF.20383.3
         (1591 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma18g00280.1                                                      1425   0.0  
Glyma18g00220.1                                                      1014   0.0  

>Glyma18g00280.1 
          Length = 957

 Score = 1425 bits (3689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 700/837 (83%), Positives = 731/837 (87%), Gaps = 5/837 (0%)

Query: 756  PTLVALPFPSILVGYQDDWLKTSANCLQHWEKAPLEPYALQKPITYHVICPDIDPLTSAA 815
            P  ++LP P     YQDDWLKTSAN LQHWEKAPLEPYALQKPITYHV+CPDIDPLTSAA
Sbjct: 125  PLNLSLPHPV----YQDDWLKTSANSLQHWEKAPLEPYALQKPITYHVVCPDIDPLTSAA 180

Query: 816  ADFFQQLGTVYETCKLGTHSPQGLGNQMEIESAKSSSCGFVLLDCPQSMKIESSNASLVG 875
            ADFFQQLGTVYETCKLGTHSPQGLGNQ+EIESAK SSCGFVLLDCPQSMKIESSNASLVG
Sbjct: 181  ADFFQQLGTVYETCKLGTHSPQGLGNQIEIESAKLSSCGFVLLDCPQSMKIESSNASLVG 240

Query: 876  SVSDYFLSLSNGWDLTSYLKSLSKALRALNLSSSFSTNPSEGSNCSCLVIYVVCPFPDPT 935
            SVSDYFLSLSNGWDLTSYLKSLSKALR L + S FSTNPSEGSN SCLVIYVVCPFPDPT
Sbjct: 241  SVSDYFLSLSNGWDLTSYLKSLSKALRGLKIGSCFSTNPSEGSNSSCLVIYVVCPFPDPT 300

Query: 936  AILQTXXXXXXXXXXXXXXXDRERRSSLHSQVVKALSGLATVDEASASNILVLSGFSIPK 995
            AILQT               DRERRSSLHSQVVKALSGLATVDEASASNILVLSGFSIPK
Sbjct: 301  AILQTVIESSVAIGSVVQQSDRERRSSLHSQVVKALSGLATVDEASASNILVLSGFSIPK 360

Query: 996  LVLQIVTVDAIFRVTSPSVSELVILKETAFTVYNKARRISRGISNDFSQLAFSSRSQSVL 1055
            LVLQIVTVDAIFRVTSPSVSELVILKET+FTVY+KARRISRGIS+DF+Q AFSSRS S L
Sbjct: 361  LVLQIVTVDAIFRVTSPSVSELVILKETSFTVYSKARRISRGISSDFAQSAFSSRSHSGL 420

Query: 1056 TQMPSPISGMWKDCVGPRM-GHSLPREGDIDASLRPSNWDNSWQPTRTGVLSCDPSRSGD 1114
            TQMPSPISGMWKDCVGPRM GHSLPREGDIDASLRP  WDNSWQPTRTG LSCDPSR+GD
Sbjct: 421  TQMPSPISGMWKDCVGPRMAGHSLPREGDIDASLRPGTWDNSWQPTRTGGLSCDPSRTGD 480

Query: 1115 ILLHDEIRYMFEPLFILAEPGSPEHGISVIGSPTSESSKALTDDSSANYVQXXXXXXXXX 1174
              LHDEIRYMFEPLFILAEPGS E+GISVIGSPTSESSKAL DDSS NYVQ         
Sbjct: 481  NFLHDEIRYMFEPLFILAEPGSLENGISVIGSPTSESSKALADDSSGNYVQSTSTAGSVE 540

Query: 1175 XXXXXXXXXXXQKTHPSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTK 1234
                        KT PSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTK
Sbjct: 541  SASSTDASGSDPKTPPSLHCCYGWTEDWRWLVCIWTDSRGELLDCNIFPFGGISSRQDTK 600

Query: 1235 GLQCLFVQVLQQGCLILQSCDSGLAKPRDFVIARIGGFYELEYLEWQKALYSVGGSEMKR 1294
            GLQCLFVQ+LQQGCLILQSCD GLAKPRDFVIARIGGFYELEYLEWQKA+YSVG SEMKR
Sbjct: 601  GLQCLFVQILQQGCLILQSCDPGLAKPRDFVIARIGGFYELEYLEWQKAIYSVGVSEMKR 660

Query: 1295 WPLQLRKSLSDGVSATSNGSSLQQSDMSLIPERTXXXXXXXXXXXHAKPTAYMKANLGQP 1354
            WPLQLRKS+SDG+SATSNGSSLQQSDMSLIPERT           H K   +MK +LGQP
Sbjct: 661  WPLQLRKSMSDGMSATSNGSSLQQSDMSLIPERTLPSSPSPLYSPHTKSPGFMKGSLGQP 720

Query: 1355 AARKQLMGGHSMVDNSRGLLHWAQSISFVAVSMDHTLKLVLPSDSSSPGYVEGFTPVKSL 1414
             ARKQL+GGHSMVDNSRGLLHWAQSISFVAVSMDHTL+LVLP+DSS+PGY+EGFTPVKSL
Sbjct: 721  TARKQLIGGHSMVDNSRGLLHWAQSISFVAVSMDHTLQLVLPADSSTPGYIEGFTPVKSL 780

Query: 1415 GSTSSAYILIPSPSMRFLPPTALQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVP 1474
            GSTSSAYILIPSPSMRFLP T LQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVP
Sbjct: 781  GSTSSAYILIPSPSMRFLPTTVLQLPTCLTAESPPLAHLLHSKGSALPLSTGFVVSKAVP 840

Query: 1475 SMRKDHRSNLKEEWPSVLSVNLIDYYGGSNIQQEKFIRGINKQGGRGLSWDAKDFEVQTX 1534
            SMRKD+R+N KEEWPSVLSV+LIDYYGG+NI QEK +RGINKQGGR LSW+AKDFE++T 
Sbjct: 841  SMRKDYRANQKEEWPSVLSVSLIDYYGGTNIPQEKIVRGINKQGGRSLSWEAKDFEIETH 900

Query: 1535 XXXXXXXXXXXXXXWMTVSPAYLERRTALPFHCDMVIRLRRLLHFADKELFKQSEKS 1591
                          WMTVSP YLERRTALPFHCDMV+RLRRLLHFADKEL KQSEKS
Sbjct: 901  LVLESLAAELHALSWMTVSPTYLERRTALPFHCDMVLRLRRLLHFADKELSKQSEKS 957


>Glyma18g00220.1 
          Length = 1113

 Score = 1014 bits (2622), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 526/762 (69%), Positives = 578/762 (75%), Gaps = 48/762 (6%)

Query: 10   SFVHCAGNVDSTEDPWSEINGTRTQXXXXXXXXXXXXXXXXXXXXXXXXXFKTTGPSELE 69
            S +  AGNVD TEDPW+EINGTRTQ                         +KTTGPSELE
Sbjct: 343  SSLRSAGNVDCTEDPWTEINGTRTQSSYDSSSNSNNSSISSLSASSSDSDYKTTGPSELE 402

Query: 70   ADADSLTCRQSTISSADQLENDGPKLGSKRSRMAMTESLSTATNVPVQDAYMSDFGSMEV 129
            ADADSLTCRQS              +GSKRSR  +TE L                     
Sbjct: 403  ADADSLTCRQS--------------MGSKRSRTGVTELL--------------------- 427

Query: 130  NNSAITRVGNESVGSYWDWDDEDRGMEMDIQALLSXXXXXXXXXXNDVLPFGEPPGTAES 189
                  RVGNE +GSYWDWDD+DRGMEMDIQALLS          NDVLPFGEPPGTAES
Sbjct: 428  ------RVGNEPIGSYWDWDDDDRGMEMDIQALLSEFGDFGDFFENDVLPFGEPPGTAES 481

Query: 190  QTLMFSAPDCGDVNSSPVGAMMDVSDQMLLPVGFSSFECFNPPPPSVMEECLDKSQDNLN 249
            Q LM SAPDCGDVNSSP G ++DV DQ+LLPVGF+SFE FNPPP + +EECL+KSQDNLN
Sbjct: 482  QALMLSAPDCGDVNSSP-GGVIDVPDQILLPVGFASFESFNPPPSTSIEECLNKSQDNLN 540

Query: 250  NSMSSGPTNQTQMLYTKEFDHIMKAEAMMTFAPEFGAVETPTSELSTTLFRSPYFPKSRK 309
            NSMS GPTNQ Q+LYT+EFDHIMKAEAMMTFAPEFGAV+TPT E STTLFRSPYFPKSRK
Sbjct: 541  NSMSLGPTNQNQLLYTREFDHIMKAEAMMTFAPEFGAVDTPTCEFSTTLFRSPYFPKSRK 600

Query: 310  ADXXXXXXXXXLYGAAPPSSPYVEGSESKNGVVFNTKTGSGKHDAS-MSLHSKNYYTFVQ 368
            A          LYGAAPP+S   EGSE KNG   NTKTGSGKHDAS MSLHSK YYTFV+
Sbjct: 601  AKSSTSSSSNYLYGAAPPTSTCTEGSEGKNGKSVNTKTGSGKHDASTMSLHSKYYYTFVE 660

Query: 369  SRKDLNDKKPVTCNDNSIAKSEGIGPPQFSNIGSNAVVKSVLRKMTEGTNETEHSLLSAK 428
            SRK+ NDK P TCNDNSI KSEG+  P  SNIGSNA+VKS +RK T+ T+E E  LLSAK
Sbjct: 661  SRKEKNDKNPATCNDNSITKSEGM--PPLSNIGSNAIVKSAIRKTTDCTHEAEQFLLSAK 718

Query: 429  TLLATDISCAMLQASMCRSRHVLLSSSNLIPVGLNRSSGVSFVNHLPIDPSTNTDNISGK 488
            TLLATDI+C MLQASMCR RH+LLSS NL+P GL+RS+GVSF+N LP DPS  TDNISGK
Sbjct: 719  TLLATDITCIMLQASMCRLRHILLSSGNLMPAGLSRSTGVSFLNQLPSDPSMTTDNISGK 778

Query: 489  YEVKKKENIPVRXXXXXXXXXXXXHLNAPVGVWRTVGASKVVKPSNSPNMEIGPSFSHNS 548
            Y+VKKKENIP+R            HLNAPVGVWRT+GASKVVKPSNSPNME+ PSF HNS
Sbjct: 779  YDVKKKENIPIRIAGDIDGGMLDGHLNAPVGVWRTLGASKVVKPSNSPNMEVVPSFPHNS 838

Query: 549  FNEEGILSYGQRKPLQELLDGIAFLVQQAISFVDLALDADCGDGPYGLLALQEHWRRGFC 608
            FNEEGILSYGQRKPLQELLDGIA LVQQAISFVDLALD DCGDGPYGLLA+QE WRRGFC
Sbjct: 839  FNEEGILSYGQRKPLQELLDGIALLVQQAISFVDLALDVDCGDGPYGLLAMQEQWRRGFC 898

Query: 609  CGPSMVPAGCGGTLSSSHSLDIAGLELVDPLSSDVHASTLINLLQSDIKMALKSAFSNLE 668
            CGPSMV AGCGG+L+SSHSLDIAGLELVDPLS+DVHAST+I+LLQSDIK ALKSAF NLE
Sbjct: 899  CGPSMVHAGCGGSLASSHSLDIAGLELVDPLSADVHASTVISLLQSDIKTALKSAFPNLE 958

Query: 669  GPLSVTDWCQGRNQSVDIGSIADCISAESSISECRXXXXXXXXXXXXXGIKVSSMMDNSK 728
            GPLSVTDWC+GRNQ +D GS+ D +SAES+I+E                  VS+MMD  K
Sbjct: 959  GPLSVTDWCKGRNQLIDTGSVVDGVSAESNINELLRVEVCIDVSDGDL-FAVSNMMD--K 1015

Query: 729  VDENSQRRCGQDMCNSESEQQPCSRLKPTLVALPFPSILVGY 770
            VDE SQRR GQD+C++ESEQQ CSRLKPTL+ALPFPSILVGY
Sbjct: 1016 VDETSQRRSGQDLCSTESEQQTCSRLKPTLIALPFPSILVGY 1057