Miyakogusa Predicted Gene
- Lj0g3v0298839.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0298839.1 Non Chatacterized Hit- tr|I3SY08|I3SY08_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,100,6e-37,no
description,NULL; Sm-like ribonucleoproteins,Like-Sm (LSM) domain;
snRNP Sm proteins,Ribonucleopr,CUFF.20069.1
(78 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma17g07060.1 160 3e-40
Glyma20g21250.1 160 3e-40
Glyma17g07060.2 135 9e-33
Glyma09g39830.1 74 4e-14
Glyma18g46370.1 71 3e-13
Glyma09g39830.2 67 4e-12
>Glyma17g07060.1
Length = 88
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
Query: 61 GEILIRCNNVLYLRGVPE 78
GEILIRCNNVLYLRGVPE
Sbjct: 61 GEILIRCNNVLYLRGVPE 78
>Glyma20g21250.1
Length = 88
Score = 160 bits (405), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/78 (100%), Positives = 78/78 (100%)
Query: 1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
Query: 61 GEILIRCNNVLYLRGVPE 78
GEILIRCNNVLYLRGVPE
Sbjct: 61 GEILIRCNNVLYLRGVPE 78
>Glyma17g07060.2
Length = 78
Score = 135 bits (340), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/66 (100%), Positives = 66/66 (100%)
Query: 1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL
Sbjct: 1 MATIPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNL 60
Query: 61 GEILIR 66
GEILIR
Sbjct: 61 GEILIR 66
>Glyma09g39830.1
Length = 91
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 44/66 (66%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 68 NNVLYL 73
NNVLY+
Sbjct: 75 NNVLYI 80
>Glyma18g46370.1
Length = 91
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 43/66 (65%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 68 NNVLYL 73
NN LY+
Sbjct: 75 NNGLYI 80
>Glyma09g39830.2
Length = 80
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%)
Query: 8 PKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIEGQFTGNLGEILIRC 67
P FL ++ G+PV+VKL G++Y+G L +D YMN+ + TEEY+ GQ G+ IR
Sbjct: 15 PADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFIRG 74
Query: 68 NN 69
NN
Sbjct: 75 NN 76