Miyakogusa Predicted Gene
- Lj0g3v0292029.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0292029.2 Non Chatacterized Hit- tr|C0PB35|C0PB35_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,65.15,8e-17,TRANSCRIPTION ELONGATION FACTOR-RELATED,NULL;
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3,NULL; ,CUFF.19515.2
(194 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma08g15430.1 245 3e-65
Glyma05g32140.1 235 2e-62
Glyma06g15430.4 216 1e-56
Glyma06g15430.3 216 2e-56
Glyma06g15430.1 214 6e-56
Glyma04g39470.2 204 4e-53
Glyma06g15430.2 176 2e-44
Glyma04g39470.1 168 3e-42
Glyma03g28000.1 64 9e-11
Glyma19g30780.1 64 1e-10
Glyma02g18250.2 60 1e-09
Glyma02g18250.1 60 1e-09
Glyma02g18250.3 60 1e-09
>Glyma08g15430.1
Length = 314
Score = 245 bits (625), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 140/195 (71%), Gaps = 7/195 (3%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQALEETDIGRHVNRLRKHSSN+V+RLVKLLVRKWKE+VDEWVK K PGE T+V
Sbjct: 121 MDITFQALEETDIGRHVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKAPGE-PGTAV 179
Query: 61 MGDEDSPQQKTPQNGYHQIPDFSCSPNPHNGSFGLEGNN-SVXXXXXXXXXXXXXXXXXX 119
M DEDSPQQ+ QNG+ QIPDF+ SPNPH GSFG E NN
Sbjct: 180 MADEDSPQQRILQNGHRQIPDFAYSPNPHYGSFGSERNNIEAERKPKAIPRKEAPSKPSP 239
Query: 120 XXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKP 179
QNRQRE +N + +R ASARKRLQENYK+AANAKKQRTIQVMDLHELPKP
Sbjct: 240 SVTTPAPPTQNRQRE---SNFDPDRFASARKRLQENYKDAANAKKQRTIQVMDLHELPKP 296
Query: 180 KNKNTFFAKNKGGAG 194
KN F KNKGG G
Sbjct: 297 --KNAFLGKNKGGTG 309
>Glyma05g32140.1
Length = 313
Score = 235 bits (599), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 123/196 (62%), Positives = 138/196 (70%), Gaps = 8/196 (4%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TF ALEE+DIGR+VNRLRKHSSN+V+RLVKLLVRKWKE+VDEWVK K+PG T+V
Sbjct: 119 MDITFPALEESDIGRYVNRLRKHSSNDVKRLVKLLVRKWKEIVDEWVKLKSPG-YPGTAV 177
Query: 61 MGDEDSPQQKTPQNGYHQIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXX--XXXXXXXXX 118
M DEDSPQQ+ QNG+ QIPDF+ SPNPHNGS G N++
Sbjct: 178 MADEDSPQQRILQNGHRQIPDFAYSPNPHNGSSGSSQRNNIEAERKPKAIPRKEAPPKPS 237
Query: 119 XXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPK 178
QNRQRE N + +R ASARKRLQENYKEAANAKKQRTIQVMDLHELPK
Sbjct: 238 PSVTTPASPPQNRQRE---GNFDPDRFASARKRLQENYKEAANAKKQRTIQVMDLHELPK 294
Query: 179 PKNKNTFFAKNKGGAG 194
P KN F KNKGG G
Sbjct: 295 P--KNAFLGKNKGGTG 308
>Glyma06g15430.4
Length = 359
Score = 216 bits (550), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/194 (60%), Positives = 133/194 (68%), Gaps = 6/194 (3%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQAL+ETDIGRHVNRLRKH SN+VRRLVKLLVRKWKE+VDEWVK G + ++
Sbjct: 155 MDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGR--SNTL 212
Query: 61 MGDEDSPQ-QKTPQNGYH--QIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXXXXXXXXXX 117
M D DSP QKT QNG+H QIPDF+ SPNPHNGS G + NNS
Sbjct: 213 MADGDSPPVQKTTQNGHHHQQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVVPRSEPRPK 272
Query: 118 XXXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELP 177
Q QRD+N +AERLASAR+RLQENYKEA AK+QRTIQVMD+HELP
Sbjct: 273 PAPSPSVSTPASATQNRQRDSNFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHELP 332
Query: 178 KPKNK-NTFFAKNK 190
K K K N FF KNK
Sbjct: 333 KSKPKNNAFFGKNK 346
>Glyma06g15430.3
Length = 360
Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 133/195 (68%), Gaps = 7/195 (3%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQAL+ETDIGRHVNRLRKH SN+VRRLVKLLVRKWKE+VDEWVK G + ++
Sbjct: 155 MDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGR--SNTL 212
Query: 61 MGDEDSPQ-QKTPQNGYH---QIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXXXXXXXXX 116
M D DSP QKT QNG+H QIPDF+ SPNPHNGS G + NNS
Sbjct: 213 MADGDSPPVQKTTQNGHHHQQQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVVPRSEPRP 272
Query: 117 XXXXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHEL 176
Q QRD+N +AERLASAR+RLQENYKEA AK+QRTIQVMD+HEL
Sbjct: 273 KPAPSPSVSTPASATQNRQRDSNFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHEL 332
Query: 177 PKPKNK-NTFFAKNK 190
PK K K N FF KNK
Sbjct: 333 PKSKPKNNAFFGKNK 347
>Glyma06g15430.1
Length = 361
Score = 214 bits (544), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 117/196 (59%), Positives = 133/196 (67%), Gaps = 8/196 (4%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQAL+ETDIGRHVNRLRKH SN+VRRLVKLLVRKWKE+VDEWVK G + ++
Sbjct: 155 MDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGR--SNTL 212
Query: 61 MGDEDSPQ-QKTPQNGYH----QIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXXXXXXXX 115
M D DSP QKT QNG+H +IPDF+ SPNPHNGS G + NNS
Sbjct: 213 MADGDSPPVQKTTQNGHHHQQVEIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVVPRSEPR 272
Query: 116 XXXXXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHE 175
Q QRD+N +AERLASAR+RLQENYKEA AK+QRTIQVMD+HE
Sbjct: 273 PKPAPSPSVSTPASATQNRQRDSNFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHE 332
Query: 176 LPKPKNK-NTFFAKNK 190
LPK K K N FF KNK
Sbjct: 333 LPKSKPKNNAFFGKNK 348
>Glyma04g39470.2
Length = 356
Score = 204 bits (520), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/188 (57%), Positives = 128/188 (68%), Gaps = 4/188 (2%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQ L+ETDIGRHVNRLRKH SN++RRLVKLLVRKWKE+VDEWVK G + ++
Sbjct: 154 MDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRG--GSNTL 211
Query: 61 MGDED-SPQQKTPQNGYH-QIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXXXXXXXXXXX 118
M D D SP QKT QNG+H QIPDF+ SPNPHNGS G + NNS
Sbjct: 212 MADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKH 271
Query: 119 XXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPK 178
Q QR+++ +AERLASAR+RLQENYKEA AK+QRTIQVMD+H+LPK
Sbjct: 272 APSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEAEIAKRQRTIQVMDIHDLPK 331
Query: 179 PKNKNTFF 186
K KN F
Sbjct: 332 AKPKNNAF 339
>Glyma06g15430.2
Length = 327
Score = 176 bits (445), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/162 (58%), Positives = 108/162 (66%), Gaps = 5/162 (3%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQAL+ETDIGRHVNRLRKH SN+VRRLVKLLVRKWKE+VDEWVK G + ++
Sbjct: 155 MDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKLNPQGR--SNTL 212
Query: 61 MGDEDSPQ-QKTPQNGYH--QIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXXXXXXXXXX 117
M D DSP QKT QNG+H QIPDF+ SPNPHNGS G + NNS
Sbjct: 213 MADGDSPPVQKTTQNGHHHQQIPDFAYSPNPHNGSSGSDRNNSEAEHKPKVVPRSEPRPK 272
Query: 118 XXXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEA 159
Q QRD+N +AERLASAR+RLQENYKEA
Sbjct: 273 PAPSPSVSTPASATQNRQRDSNFDAERLASARRRLQENYKEA 314
>Glyma04g39470.1
Length = 364
Score = 168 bits (426), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 91/161 (56%), Positives = 107/161 (66%), Gaps = 4/161 (2%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
MD+TFQ L+ETDIGRHVNRLRKH SN++RRLVKLLVRKWKE+VDEWVK G + ++
Sbjct: 154 MDITFQGLKETDIGRHVNRLRKHPSNDLRRLVKLLVRKWKEIVDEWVKLNPRG--GSNTL 211
Query: 61 MGDED-SPQQKTPQNGYH-QIPDFSCSPNPHNGSFGLEGNNSVXXXXXXXXXXXXXXXXX 118
M D D SP QKT QNG+H QIPDF+ SPNPHNGS G + NNS
Sbjct: 212 MADGDSSPVQKTTQNGHHQQIPDFAYSPNPHNGSSGSDRNNSEAERKPKVVPRSEPRPKH 271
Query: 119 XXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEA 159
Q QR+++ +AERLASAR+RLQENYKEA
Sbjct: 272 APSPSVSTPASATQNRQRESSFDAERLASARRRLQENYKEA 312
>Glyma03g28000.1
Length = 455
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
M++T L+ T+IG+ VN LRKH S ++R+L + L+ WKE+VDEWVK T T++
Sbjct: 168 MELTVDCLKATEIGKAVNPLRKHGSKDIRQLARTLINGWKEMVDEWVKATT-----TTAI 222
Query: 61 MGDED-SPQQKTP 72
G E+ +P P
Sbjct: 223 TGSEEGTPDSVNP 235
>Glyma19g30780.1
Length = 458
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
M++T L+ T+IG+ VN LRKH S ++R+L + L+ WKE+VDEWVK T T++
Sbjct: 172 MELTVDCLKATEIGKAVNPLRKHGSKDIRQLSRTLIDGWKEMVDEWVKATT-----TTAI 226
Query: 61 MGDED-SPQQKTP 72
G E+ +P P
Sbjct: 227 TGSEEGTPDSVNP 239
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 37/44 (84%), Gaps = 1/44 (2%)
Query: 144 RLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPK-NKNTFF 186
+L + +++LQE+Y++A NAK+QRTIQVM++++LPK ++NT F
Sbjct: 401 KLEATKRKLQESYQQAENAKRQRTIQVMEINDLPKQGLHRNTHF 444
>Glyma02g18250.2
Length = 453
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
M++T L+ T+IG+ VN LRKH S ++ +L + L+ WK++VDEWVK T++
Sbjct: 174 MELTVDLLKATEIGKAVNPLRKHGSRDICQLARTLIDGWKQMVDEWVK-------DTTAI 226
Query: 61 MGDEDSPQQKTP 72
G E +P P
Sbjct: 227 AGSEGTPDSVNP 238
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 30/35 (85%)
Query: 144 RLASARKRLQENYKEAANAKKQRTIQVMDLHELPK 178
+L + +++LQE Y++A AK+QRT+QVM+LH+LPK
Sbjct: 395 KLEATKRKLQERYQQAEKAKRQRTVQVMELHDLPK 429
>Glyma02g18250.1
Length = 453
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
M++T L+ T+IG+ VN LRKH S ++ +L + L+ WK++VDEWVK T++
Sbjct: 174 MELTVDLLKATEIGKAVNPLRKHGSRDICQLARTLIDGWKQMVDEWVK-------DTTAI 226
Query: 61 MGDEDSPQQKTP 72
G E +P P
Sbjct: 227 AGSEGTPDSVNP 238
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 30/35 (85%)
Query: 144 RLASARKRLQENYKEAANAKKQRTIQVMDLHELPK 178
+L + +++LQE Y++A AK+QRT+QVM+LH+LPK
Sbjct: 395 KLEATKRKLQERYQQAEKAKRQRTVQVMELHDLPK 429
>Glyma02g18250.3
Length = 326
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 7/72 (9%)
Query: 1 MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
M++T L+ T+IG+ VN LRKH S ++ +L + L+ WK++VDEWVK T++
Sbjct: 172 MELTVDLLKATEIGKAVNPLRKHGSRDICQLARTLIDGWKQMVDEWVK-------DTTAI 224
Query: 61 MGDEDSPQQKTP 72
G E +P P
Sbjct: 225 AGSEGTPDSVNP 236