Miyakogusa Predicted Gene

Lj0g3v0289759.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0289759.3 Non Chatacterized Hit- tr|I1N5W7|I1N5W7_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,44.3,9e-19,Ribonuclease H-like,Ribonuclease H-like domain;
RNASE_H,Ribonuclease H domain; RETROELEMENT POL POLY,CUFF.19359.3
         (288 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g40180.1                                                       235   5e-62
Glyma13g04490.1                                                       225   4e-59
Glyma13g04490.4                                                       224   8e-59
Glyma13g04490.2                                                       224   8e-59
Glyma19g01570.1                                                        99   5e-21
Glyma07g35480.1                                                        56   5e-08
Glyma08g41350.1                                                        52   1e-06

>Glyma08g40180.1 
          Length = 373

 Score =  235 bits (599), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 135/223 (60%), Positives = 150/223 (67%), Gaps = 32/223 (14%)

Query: 1   MNCLSQLSSYTATIVGRTARFIAANRXXXXXXILSFPRKSAFSGVSSCHSELFLNRFHFR 60
           MN LSQLSSYTA IVG T R IA NR        SFP K  + G+ S  SE  L     R
Sbjct: 1   MNRLSQLSSYTAAIVGSTVRLIA-NRSLRHR-CCSFPAKPEYRGIRSFRSEFALTAA--R 56

Query: 61  CYSARKGRK-------PEAVMEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVS 113
           CYSA+KGRK       P  VMEQEKDAFYVVRKGD+VG+YNSL+DSQAQVGSSVC+PPVS
Sbjct: 57  CYSAKKGRKSKAEPEVPAVVMEQEKDAFYVVRKGDVVGIYNSLADSQAQVGSSVCNPPVS 116

Query: 114 VYKGYSLSKGTEEYLLSHGLKNALYTIEASELKEDLFGLLVPCPF--------------- 158
           VYKGYSLSK TEEYL+SHGLKNALYTI A++LKEDLFG+LVPCPF               
Sbjct: 117 VYKGYSLSKDTEEYLVSHGLKNALYTIRATDLKEDLFGMLVPCPFQEPSTKEGTSNKDVS 176

Query: 159 -QRVTGPTS-----ISDDPLRKQVKLENDAVAEASSLETTCLL 195
            QR  G  +     IS+DP RKQVKLE   VAEA S  T  ++
Sbjct: 177 KQRSLGVLAQDEKVISEDPFRKQVKLEYAEVAEAPSHATAAIV 219


>Glyma13g04490.1 
          Length = 283

 Score =  225 bits (574), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 123/239 (51%), Positives = 152/239 (63%), Gaps = 33/239 (13%)

Query: 74  MEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSHGL 133
           M +EKDAFYVVRKGD+VG+Y S SD Q  + SSV   PVS+YKGYSL + TEEYL+SHGL
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60

Query: 134 KNALYTIEASELKEDLFGLLVPCPFQ----------------------------RVTGPT 165
           K A Y+I A+++ E LFG LV CP+Q                            ++ G  
Sbjct: 61  KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAIQFDTGKLAGSF 120

Query: 166 SISDDPLRKQVKLENDAVAEASSLETTCLLEFDGASKGNPGKAGAGAILRSTDGSLICRL 225
           S   + LR        + AE SS   +C L FDGASKGNPG AGAGAIL   DGS + RL
Sbjct: 121 SYPPNSLRNHTL--GGSQAEWSSC-LSCTLHFDGASKGNPGPAGAGAILH--DGSKVYRL 175

Query: 226 REGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANLSSL 284
           REG GI TNN AEYR++ILG+++ALKKG+  I ++GDS LVC QI G WK+KN N+ +L
Sbjct: 176 REGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQNMGTL 234


>Glyma13g04490.4 
          Length = 282

 Score =  224 bits (571), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 151/238 (63%), Gaps = 32/238 (13%)

Query: 74  MEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSHGL 133
           M +EKDAFYVVRKGD+VG+Y S SD Q  + SSV   PVS+YKGYSL + TEEYL+SHGL
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60

Query: 134 KNALYTIEASELKEDLFGLLVPCPFQR---------------------------VTGPTS 166
           K A Y+I A+++ E LFG LV CP+Q                            + G  S
Sbjct: 61  KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAIQFDTGLAGSFS 120

Query: 167 ISDDPLRKQVKLENDAVAEASSLETTCLLEFDGASKGNPGKAGAGAILRSTDGSLICRLR 226
              + LR        + AE SS   +C L FDGASKGNPG AGAGAIL   DGS + RLR
Sbjct: 121 YPPNSLRNHTL--GGSQAEWSSC-LSCTLHFDGASKGNPGPAGAGAILH--DGSKVYRLR 175

Query: 227 EGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANLSSL 284
           EG GI TNN AEYR++ILG+++ALKKG+  I ++GDS LVC QI G WK+KN N+ +L
Sbjct: 176 EGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQNMGTL 233


>Glyma13g04490.2 
          Length = 282

 Score =  224 bits (571), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 123/238 (51%), Positives = 151/238 (63%), Gaps = 32/238 (13%)

Query: 74  MEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSHGL 133
           M +EKDAFYVVRKGD+VG+Y S SD Q  + SSV   PVS+YKGYSL + TEEYL+SHGL
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIQPLLASSVSSDPVSIYKGYSLPQKTEEYLVSHGL 60

Query: 134 KNALYTIEASELKEDLFGLLVPCPFQR---------------------------VTGPTS 166
           K A Y+I A+++ E LFG LV CP+Q                            + G  S
Sbjct: 61  KGAPYSISAADVNEGLFGRLVACPYQDPYSSGGRAFNVSSSSRNLQGAIQFDTGLAGSFS 120

Query: 167 ISDDPLRKQVKLENDAVAEASSLETTCLLEFDGASKGNPGKAGAGAILRSTDGSLICRLR 226
              + LR        + AE SS   +C L FDGASKGNPG AGAGAIL   DGS + RLR
Sbjct: 121 YPPNSLRNHTL--GGSQAEWSSC-LSCTLHFDGASKGNPGPAGAGAILH--DGSKVYRLR 175

Query: 227 EGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANLSSL 284
           EG GI TNN AEYR++ILG+++ALKKG+  I ++GDS LVC QI G WK+KN N+ +L
Sbjct: 176 EGVGIQTNNVAEYRSLILGLKHALKKGYKHIIVQGDSLLVCNQIQGLWKIKNQNMGTL 233


>Glyma19g01570.1 
          Length = 184

 Score = 99.0 bits (245), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 80/149 (53%), Gaps = 28/149 (18%)

Query: 74  MEQEKDAFYVVRKGDIVGVYNSLSDSQAQVGSSVCDPPVSVYKGYSLSKGTEEYLLSHGL 133
           M +EKDAFYVVRKGD+VG+Y S SD +  + S V   PVS+YKGYSL   TEEYL+S   
Sbjct: 1   MAEEKDAFYVVRKGDVVGIYKSFSDIRPSLASFVSSDPVSIYKGYSLPPKTEEYLVS--- 57

Query: 134 KNALYTIEASELKEDLFGLLVPCPFQRVTGPTSISDDPLRKQVKLENDAVAEASSLETTC 193
                    ++ K D        P+       ++S         ++ D          +C
Sbjct: 58  --------PADCKFD--------PYSSGGRAFNVSSSSRNLHGAIQFDT-------RLSC 94

Query: 194 LLEFDGASKGNPGKAGAGAILRSTDGSLI 222
            L FDGASKGNPG AGAGAILR  DGS I
Sbjct: 95  NLHFDGASKGNPGPAGAGAILR--DGSKI 121


>Glyma07g35480.1 
          Length = 2270

 Score = 55.8 bits (133), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 16/115 (13%)

Query: 169  DDPLRKQVKLENDAVAEASSLETTCLLEFDGASK--GNPGKAGAGAILRSTDGSLICRLR 226
            DDPL          + E    E+   L FDGA    GN    G GA++ + +G+ +    
Sbjct: 1682 DDPL----------LGEGPDPESRWGLIFDGAVNVFGN----GIGAVIITPEGNHLPFAA 1727

Query: 227  EGAGIATNNAAEYRAMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANL 281
                + TNN AEY A ILG+  A+      + I GDS LV  QI G W+ ++  L
Sbjct: 1728 RLQFVCTNNMAEYEACILGIEKAIDLRIKNLDIYGDSALVINQIKGEWETRHPGL 1782


>Glyma08g41350.1 
          Length = 2794

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 183  VAEASSLETTCLLEFDGASK--GNPGKAGAGAILRSTDGSLICRLREGAGIATNNAAEYR 240
            + E    E+   L FDGA    GN    G GA++ + +G+ +          TNN AEY 
Sbjct: 2210 LGEGPDPESRWGLIFDGAVNVFGN----GIGAVIITPEGNHLPFAARLQFDCTNNVAEYE 2265

Query: 241  AMILGMRYALKKGFTGIRIKGDSKLVCMQIDGSWKVKNANL 281
            A ILG+  A+      + I GDS LV  QI G W+ ++  L
Sbjct: 2266 ACILGIEKAIDLKSKNLDIYGDSALVINQIKGEWETRHPGL 2306