Miyakogusa Predicted Gene

Lj0g3v0286529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286529.1 tr|B9MYC2|B9MYC2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594619 PE=4
SV=1,30.97,0.0000000000001,seg,NULL,CUFF.19126.1
         (229 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g13840.1                                                       227   1e-59
Glyma06g44060.1                                                       204   6e-53

>Glyma12g13840.1 
          Length = 230

 Score =  227 bits (578), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 132/227 (58%), Positives = 152/227 (66%), Gaps = 5/227 (2%)

Query: 5   LLQGGNEEPDDLKTTEDTELANRMSKDLNLDDFAADQFGXXXXXXXXXXAPSTFTLSND- 63
           L    NEE  +LKT ED+ELANRMSK+L+LDD AADQF           A STF LSN+ 
Sbjct: 7   LAVSSNEEHKELKTKEDSELANRMSKELDLDDLAADQF-TSSSSSSSSHAVSTFPLSNNV 65

Query: 64  FMVPVNYVNDEFQHVGSSGKMKSCLPSAEGNLHSTKDKTGKQ-PTFEAATAEKELDMLLD 122
           F +PVNYVN E Q    S K K+ +P ++ +LHST+D  GKQ   F AA  EKELDMLLD
Sbjct: 66  FHIPVNYVNAEAQQTSCSSKNKAFVPCSDASLHSTEDARGKQYSAFGAADVEKELDMLLD 125

Query: 123 SLGETKILDSTGVKSNAGFPVSLGASLVDPSQISYQEPATSETASVTASIDDALDDLLEE 182
           SL ETKILDS+G KS    PVSLG S V P Q+S ++P  S+TAS+TAS+DDALD+LLEE
Sbjct: 126 SLSETKILDSSGFKSYTSIPVSLGVSSVYP-QVSKKDPVPSKTASITASLDDALDELLEE 184

Query: 183 TSTLMNPNVSLRRPQEEKPVTQXXXXXXXXXXXXXXXDDFDSWFDTL 229
           TSTLMNPNV L RPQEEKP                  DDFDSWFDTL
Sbjct: 185 TSTLMNPNV-LLRPQEEKPFHHSMQSSSHSGNKSKVADDFDSWFDTL 230


>Glyma06g44060.1 
          Length = 222

 Score =  204 bits (519), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 126/223 (56%), Positives = 151/223 (67%), Gaps = 3/223 (1%)

Query: 8   GGNEEPDDLKTTEDTELANRMSKDLNLDDFAADQFGXXXXXXXXXXAPSTFTLSNDFMVP 67
             +EE ++LKT +++ELANRMS++L++DD AADQF           A STF LSNDF +P
Sbjct: 2   SSSEEHEELKTKDESELANRMSEELDVDDLAADQF-ISSSSSSSSHAASTFPLSNDFRIP 60

Query: 68  VNYVNDEFQHVGSSGKMKSCLPSAEGNLHSTKDKTGK-QPTFEAATAEKELDMLLDSLGE 126
           VNYV+ E Q   SSGK K+ + S++ +LHST+D  GK   TFEAA AEKELDMLLDS GE
Sbjct: 61  VNYVDAEAQQTSSSGKNKAFVLSSDASLHSTEDTRGKPYSTFEAADAEKELDMLLDSFGE 120

Query: 127 TKILDSTGVKSNAGFPVSLGASLVDPSQISYQEPATSETASVTASIDDALDDLLEETSTL 186
           T ILDS+G KSN   PVS G + V P  IS ++P  S+TA +TAS+DD LDDLLE TSTL
Sbjct: 121 TNILDSSGFKSNTSIPVSSGVASVYPPHISNKDPVPSKTAPITASLDDVLDDLLEGTSTL 180

Query: 187 MNPNVSLRRPQEEKPVTQXXXXXXXXXXXXXXXDDFDSWFDTL 229
            NPNV L RPQEEKPV                 DDFDSWFDTL
Sbjct: 181 TNPNV-LLRPQEEKPVHHSMQSSSNSGSKSKVADDFDSWFDTL 222