Miyakogusa Predicted Gene

Lj0g3v0286159.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286159.1 Non Chatacterized Hit- tr|I1L775|I1L775_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,58.33,0.000000000004,no description,Nucleotide-binding,
alpha-beta plait; coiled-coil,NULL; RNA-binding domain,
RBD,NULL;,CUFF.19089.1
         (229 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma09g41830.1                                                        69   4e-12
Glyma20g00620.1                                                        69   5e-12
Glyma12g03070.1                                                        63   2e-10
Glyma11g10790.1                                                        62   7e-10

>Glyma09g41830.1 
          Length = 259

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/51 (66%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 180 PKTPTTMKGKDA-PKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
           PK   T   ++A  KTI  RNLSYSVERADLE+LFK+CGE+VDV LHTD+E
Sbjct: 162 PKMLATPNERNAGSKTIVTRNLSYSVERADLENLFKECGEIVDVRLHTDAE 212


>Glyma20g00620.1 
          Length = 76

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/51 (68%), Positives = 40/51 (78%), Gaps = 1/51 (1%)

Query: 180 PKTPTTMKGKDA-PKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTDSE 229
           PK  +T   ++A  KTI  RNLSYSVERADLE+LFK CGEVVDV LHTD+E
Sbjct: 24  PKMLSTPNERNAGSKTIVTRNLSYSVERADLENLFKPCGEVVDVRLHTDAE 74


>Glyma12g03070.1 
          Length = 744

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 35/50 (70%), Gaps = 1/50 (2%)

Query: 179 CPKTPTTMKGK-DAPKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTD 227
            PKTP T K +  A KT++V NL +SVERAD+E  FKD GEVVDV   TD
Sbjct: 459 APKTPVTPKEETGASKTLFVGNLPFSVERADVEDFFKDAGEVVDVRFATD 508


>Glyma11g10790.1 
          Length = 748

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 179 CPKTPTTMKGKDA-PKTIYVRNLSYSVERADLESLFKDCGEVVDVHLHTD 227
            PKTP T + +    KT++V NL +SVERAD+E  FKD GEVVDV   TD
Sbjct: 464 APKTPVTPREESGTSKTLFVGNLPFSVERADVEGFFKDAGEVVDVRFATD 513