Miyakogusa Predicted Gene

Lj0g3v0284249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0284249.1 tr|B9GQC4|B9GQC4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_816607 PE=4
SV=1,49.19,2e-18,seg,NULL,CUFF.18948.1
         (112 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g03450.1                                                       144   3e-35
Glyma16g03450.3                                                       142   8e-35
Glyma16g03450.2                                                       140   3e-34
Glyma16g03450.4                                                       140   4e-34

>Glyma16g03450.1 
          Length = 536

 Score =  144 bits (362), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 81/94 (86%), Gaps = 6/94 (6%)

Query: 21  LVFPPKQQHHHHLRI---RCNGTNPNQQDDSQAQNNPLLKIAWYSSELLGIAASAFRSPS 77
           L+FPPKQ H  HLRI   RC+GTNPN++  S++QNN +LK+AWYSSELLGIAAS FRSPS
Sbjct: 17  LIFPPKQ-HKQHLRIHRFRCSGTNPNKE--SESQNNAILKLAWYSSELLGIAASVFRSPS 73

Query: 78  GVEAPPQRLLETIDRAAVVDTIKQDFQRSYFVTD 111
             E PPQRLL+TIDRAAVVDTIKQDF+RSYFVTD
Sbjct: 74  NEEVPPQRLLQTIDRAAVVDTIKQDFERSYFVTD 107


>Glyma16g03450.3 
          Length = 223

 Score =  142 bits (358), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 71/94 (75%), Positives = 81/94 (86%), Gaps = 6/94 (6%)

Query: 21  LVFPPKQQHHHHLRI---RCNGTNPNQQDDSQAQNNPLLKIAWYSSELLGIAASAFRSPS 77
           L+FPPKQ H  HLRI   RC+GTNPN+  +S++QNN +LK+AWYSSELLGIAAS FRSPS
Sbjct: 17  LIFPPKQ-HKQHLRIHRFRCSGTNPNK--ESESQNNAILKLAWYSSELLGIAASVFRSPS 73

Query: 78  GVEAPPQRLLETIDRAAVVDTIKQDFQRSYFVTD 111
             E PPQRLL+TIDRAAVVDTIKQDF+RSYFVTD
Sbjct: 74  NEEVPPQRLLQTIDRAAVVDTIKQDFERSYFVTD 107


>Glyma16g03450.2 
          Length = 198

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 6/93 (6%)

Query: 21  LVFPPKQQHHHHLRI---RCNGTNPNQQDDSQAQNNPLLKIAWYSSELLGIAASAFRSPS 77
           L+FPPKQ H  HLRI   RC+GTNPN++  S++QNN +LK+AWYSSELLGIAAS FRSPS
Sbjct: 17  LIFPPKQ-HKQHLRIHRFRCSGTNPNKE--SESQNNAILKLAWYSSELLGIAASVFRSPS 73

Query: 78  GVEAPPQRLLETIDRAAVVDTIKQDFQRSYFVT 110
             E PPQRLL+TIDRAAVVDTIKQDF+RSYFVT
Sbjct: 74  NEEVPPQRLLQTIDRAAVVDTIKQDFERSYFVT 106


>Glyma16g03450.4 
          Length = 238

 Score =  140 bits (352), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 80/93 (86%), Gaps = 6/93 (6%)

Query: 21  LVFPPKQQHHHHLRI---RCNGTNPNQQDDSQAQNNPLLKIAWYSSELLGIAASAFRSPS 77
           L+FPPKQ H  HLRI   RC+GTNPN++  S++QNN +LK+AWYSSELLGIAAS FRSPS
Sbjct: 17  LIFPPKQ-HKQHLRIHRFRCSGTNPNKE--SESQNNAILKLAWYSSELLGIAASVFRSPS 73

Query: 78  GVEAPPQRLLETIDRAAVVDTIKQDFQRSYFVT 110
             E PPQRLL+TIDRAAVVDTIKQDF+RSYFVT
Sbjct: 74  NEEVPPQRLLQTIDRAAVVDTIKQDFERSYFVT 106