Miyakogusa Predicted Gene

Lj0g3v0283989.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0283989.1 tr|A9S173|A9S173_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_162224,47.5,0.00000000000003,seg,NULL; FBOX,F-box
domain, cyclin-like,CUFF.18922.1
         (183 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g23250.1                                                       176   1e-44
Glyma02g05140.1                                                       117   6e-27
Glyma08g06340.1                                                        67   1e-11
Glyma07g30950.1                                                        63   2e-10
Glyma13g32000.1                                                        60   2e-09

>Glyma16g23250.1 
          Length = 284

 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 105/163 (64%), Positives = 126/163 (77%), Gaps = 27/163 (16%)

Query: 19  QLRSSKNKYLKPGTLAQLRCNRSSGSGGGKAC--TDLGKKRVAVGLNSRET--------- 67
           Q+RSS NKYL+PG LAQLRC++ SGSGGG  C  TDLGKKRVAV L+SR++         
Sbjct: 18  QVRSSGNKYLRPGALAQLRCSKPSGSGGGGKCCCTDLGKKRVAV-LHSRKSGGGCGGGGG 76

Query: 68  --------------VEKSPVMLSPVNLVRQNS-LLGTPKTPRIEEPQSDSRLESLPMDVL 112
                          +KSPVMLSPVNLV+ NS  +GTPKTPR+++  S+S+LESLPMD+L
Sbjct: 77  GSVQQRYVENNIRVFDKSPVMLSPVNLVKHNSGFVGTPKTPRLDDSLSESKLESLPMDLL 136

Query: 113 VKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDRSR 155
           VK+LCHLHHDQL+AVFHVS++IRKAVI+ARQFHFNYTTPDRSR
Sbjct: 137 VKILCHLHHDQLRAVFHVSQKIRKAVIIARQFHFNYTTPDRSR 179


>Glyma02g05140.1 
          Length = 189

 Score =  117 bits (293), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 60/84 (71%), Positives = 70/84 (83%), Gaps = 2/84 (2%)

Query: 74  MLSPVNLVRQNS-LLGTPKTPRIEEPQSDSRLESL-PMDVLVKLLCHLHHDQLKAVFHVS 131
           MLSPVNLV+ N    GTPKTPR+++  S+S      PMD+LVK+LCHLHHDQL+AVFHVS
Sbjct: 1   MLSPVNLVKHNGGFFGTPKTPRLDDSLSESSKLESLPMDLLVKILCHLHHDQLRAVFHVS 60

Query: 132 RRIRKAVIVARQFHFNYTTPDRSR 155
           +RIRKAVI+ARQFHFN TTPDRSR
Sbjct: 61  QRIRKAVIMARQFHFNNTTPDRSR 84


>Glyma08g06340.1 
          Length = 155

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 12/112 (10%)

Query: 43  GSGGGKACTDLGKKRVAVGLNSRETVEKSPVMLSPVN-LVRQNSLLGTPKTPRIEEPQSD 101
           G  G    T LG+KRV + L+S  +   S    SPVN L R  S   T  + R       
Sbjct: 4   GFEGYSYTTTLGRKRVVL-LHSEASSLNSN---SPVNSLKRMCSKKFTFDSER------- 52

Query: 102 SRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDR 153
           SRLE+LP+DVL+++LC + H+ LK +  VS+ +R+A  VAR+ HF Y+TP +
Sbjct: 53  SRLEALPLDVLIRVLCGVDHEDLKQLVRVSKTVREAAEVARRMHFEYSTPKK 104


>Glyma07g30950.1 
          Length = 155

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 63/112 (56%), Gaps = 12/112 (10%)

Query: 43  GSGGGKACTDLGKKRVAVGLNSRETVEKSPVMLSPVN-LVRQNSLLGTPKTPRIEEPQSD 101
           G  G    T LG+KRV +  N   ++  +    S VN L R  S   T  + R       
Sbjct: 4   GFEGYSYTTTLGRKRVVLLHNEASSLNSN----SAVNPLKRMCSGKFTFDSER------- 52

Query: 102 SRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTPDR 153
           SRLE+LP+DVL+++LC + H+ L+ +  VS+ +R+A  +AR+ HF Y+TP +
Sbjct: 53  SRLEALPLDVLIRVLCGVDHEDLEQLVRVSKTVREAAEIARRMHFEYSTPKK 104


>Glyma13g32000.1 
          Length = 144

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 38/50 (76%)

Query: 102 SRLESLPMDVLVKLLCHLHHDQLKAVFHVSRRIRKAVIVARQFHFNYTTP 151
           S L++LP DVLV++LC + H+ LK +FHVS+ IR+A  V ++ HF+ +TP
Sbjct: 46  SLLDALPQDVLVQVLCGVDHEDLKQLFHVSKTIREATTVVKKLHFDISTP 95