Miyakogusa Predicted Gene

Lj0g3v0281249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0281249.1 tr|Q9SI42|Q9SI42_ARATH At2g13350 OS=Arabidopsis
thaliana GN=At2g13350 PE=2 SV=1,42.96,4e-18,seg,NULL,44481_g.1
         (149 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g20930.1                                                       126   9e-30
Glyma10g26340.1                                                       104   4e-23
Glyma03g41010.1                                                        52   3e-07

>Glyma20g20930.1 
          Length = 417

 Score =  126 bits (316), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/125 (60%), Positives = 81/125 (64%), Gaps = 13/125 (10%)

Query: 2   RSNLGNIRPVVMTESELGPSPSEVAAVMARRPRIEEGEISTVGGWSLDESVEGLQSKLER 61
           RSNLG  RP  MT+SELGPS SEVAAV+AR P IEEGE STVGGWSLD+SVEGLQ K+ER
Sbjct: 285 RSNLGR-RPF-MTDSELGPSASEVAAVVARLP-IEEGENSTVGGWSLDDSVEGLQPKVER 341

Query: 62  WRTELPPVIDRGEFSSYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFSCFSTICGVECS 121
           W+TELPPV D  E S+                              LFSCFS ICGVECS
Sbjct: 342 WQTELPPVYDGSERSN----------MTTSSKKGKHSRRQTDGGNGLFSCFSVICGVECS 391

Query: 122 IVCGG 126
           IVCGG
Sbjct: 392 IVCGG 396


>Glyma10g26340.1 
          Length = 553

 Score =  104 bits (259), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 53/71 (74%), Positives = 63/71 (88%), Gaps = 1/71 (1%)

Query: 2   RSNLGNIRPVVMTESELGPSPSEVAAVMARRPRIEEGEISTVGGWSLD-ESVEGLQSKLE 60
           RSNL N+  VV+TESELGPS SEVAAV+A++P I+E E STVGGWSLD ES+EGL+SKLE
Sbjct: 481 RSNLANMGHVVITESELGPSASEVAAVIAQKPVIDEAENSTVGGWSLDAESMEGLESKLE 540

Query: 61  RWRTELPPVID 71
           RW+T+LPPVID
Sbjct: 541 RWQTKLPPVID 551


>Glyma03g41010.1 
          Length = 354

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 51/117 (43%), Gaps = 18/117 (15%)

Query: 16  SELGPSPSEVAAVMAR--------RPRIEEGEISTVGGWSLDESVEGLQSKLERWRTELP 67
           S++GPSPS VAA +A+         PR  E   ST+ GWS +   EG+++K+ERWR EL 
Sbjct: 237 SDVGPSPSVVAAAIAKGLYPMPPPAPRTVES--STMDGWSENSGTEGMKTKIERWRNELT 294

Query: 68  PVIDRGEFSSYPXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFSCFSTICGVECSIVC 124
           P        +Y                               SCF ++ GVE SI C
Sbjct: 295 P--------AYEDYVDERKVLRQTSKRVGRTPRRRGQGGGPCSCFGSVFGVEISITC 343