Miyakogusa Predicted Gene

Lj0g3v0277959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0277959.1 tr|G7JPK5|G7JPK5_MEDTR Nucleoporin NUP188-like
protein OS=Medicago truncatula GN=MTR_4g075330 PE=4
S,73.45,0,seg,NULL,CUFF.18470.1
         (1343 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g02770.1                                                      1032   0.0  
Glyma11g10470.1                                                       681   0.0  
Glyma08g39500.1                                                       100   1e-20
Glyma20g20290.1                                                        91   1e-17
Glyma12g24560.1                                                        87   2e-16
Glyma13g00730.1                                                        73   3e-12
Glyma11g31460.1                                                        61   1e-08

>Glyma12g02770.1 
          Length = 1161

 Score = 1032 bits (2669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 545/740 (73%), Positives = 587/740 (79%), Gaps = 46/740 (6%)

Query: 649  ELEGRKIGIGPFKELSQYLLESNFLGTYQRQFNED-----FFAKNVYLFDLVQLRADLRL 703
            ELEGRKI IGPFKELSQYL+ESNFLGTYQ  FNED      F KNVYLFDL  LR DLRL
Sbjct: 423  ELEGRKIDIGPFKELSQYLVESNFLGTYQHLFNEDSFTKNMFTKNVYLFDLAHLREDLRL 482

Query: 704  NMWDCSDWRTSKEIAETMLRFLQDANSVMLFSSSKLSALKGLTAVLAVYHDD-------- 755
            ++WDCS+W+TSKEIAETMLRFLQDANSVML SSSKLSALKGL AVLAV H D        
Sbjct: 483  DLWDCSNWKTSKEIAETMLRFLQDANSVMLLSSSKLSALKGLIAVLAVNHYDNYSCKLQM 542

Query: 756  ---------SLGMAATRERMPDELMVTCIDITCQSFLATIETLSSV-------------- 792
                     +L +     R+ DEL+   +D  CQSFLATIETLSSV              
Sbjct: 543  LKCSCGSPAALLLVPYDWRISDELIFAFMDNICQSFLATIETLSSVLDASEDILNFLACQ 602

Query: 793  --------ARVWEXXXXXXXXXXXKCATSGLKILSELKLVPSEANLIMKQXXXXXXXXXQ 844
                      V +           KCA+SGLK+LS LK +PSEANLIMK          Q
Sbjct: 603  AELLLQLTRTVCKSLSLHVSLLVLKCASSGLKLLSALKPLPSEANLIMKLLLTLLLSVLQ 662

Query: 845  SNSFSSHSGGATNESSSEDFSTVSNATLGLLPILCRCIATSEHCMLSLSVMDVILRVFLV 904
            S+S ++HS GAT+ESS EDFS VSNATLGLLPILC CIATSEHCMLSLSVMD+ILR FL 
Sbjct: 663  SDSLNAHSDGATDESSGEDFSKVSNATLGLLPILCNCIATSEHCMLSLSVMDLILRRFLT 722

Query: 905  PRTWLPVLQNHLQLQFVMLKLQDKKSAA-PTIMKFFLTLARVREGADMLYCSGFLSSLRV 963
            PRTWLPVLQNHLQL  VMLKL DK SA+ P IMKFFLTLARVR GA+MLYCSGFLSSLRV
Sbjct: 723  PRTWLPVLQNHLQLPIVMLKLHDKNSASIPIIMKFFLTLARVRGGAEMLYCSGFLSSLRV 782

Query: 964  LFAESDEAFLRIGSENPGSSSEKFETLQDIWGLGLAVVTAMVQSLGDSSSGTAIVDSMMP 1023
            LFAES E FLRIGSEN GSS EKF   QDIWGLGLAVVTAMV+SLGD+SSGTAIVDSM+P
Sbjct: 783  LFAESGEDFLRIGSENLGSSCEKFVIPQDIWGLGLAVVTAMVKSLGDNSSGTAIVDSMIP 842

Query: 1024 YFFSEKAHLIFDSLNAPDFPSDDHDKKRPRAQRSCISFGNLKETEHTLMLMCELAKHWNS 1083
            YFFSEKA LIF+SLNAPDFPSDDHDKKRPRAQR+ IS   LKETEHTLMLMCELAKHWNS
Sbjct: 843  YFFSEKARLIFNSLNAPDFPSDDHDKKRPRAQRAWISLATLKETEHTLMLMCELAKHWNS 902

Query: 1084 WNKAIKNVDRQLREKCIHLLAFFSRGTQRLSESSSRNAPLLCPPTVKGDFEIALKPSYIN 1143
            W KAI+NVDRQLREKCIHLLAF SRG+QRLSE SSRNAPLLCPPTVK +FEI LKPSY+N
Sbjct: 903  WIKAIRNVDRQLREKCIHLLAFISRGSQRLSELSSRNAPLLCPPTVKEEFEICLKPSYVN 962

Query: 1144 SRNGWFALSPLGCVPKQKTPPFSTALSIYDGQAAGSTDAVPKTCFSDTVAVQVYRITYLL 1203
            S+NGWFALSPLGCVPK K   FSTALS Y GQA  S +   KT FSDTVA+QVYRI +LL
Sbjct: 963  SKNGWFALSPLGCVPKPKISSFSTALSTY-GQATESRNPASKTGFSDTVALQVYRIAFLL 1021

Query: 1204 LQFLCLQAEGASKRAEEVGFVDLAHFPELPMPEILHGLQDQASVIVAELCQANKLRESPE 1263
            L+FLCLQ EGA+KRAEEVGFVDLAHFPELPMPEILHGLQDQA  I  ELC+ANKL+ SPE
Sbjct: 1022 LKFLCLQTEGAAKRAEEVGFVDLAHFPELPMPEILHGLQDQAIAITTELCEANKLKVSPE 1081

Query: 1264 TQNVCKLLLQILEMALYLELCVLQICGIRPVLGRVEDFSKGARSLFSALEGHAFLKAYRK 1323
            TQ+VC LLLQILEMAL+LELCVLQICGIRPVLGRVEDFSK A+SLFSALEGHAFLKA   
Sbjct: 1082 TQDVCNLLLQILEMALHLELCVLQICGIRPVLGRVEDFSKEAKSLFSALEGHAFLKASCN 1141

Query: 1324 SLKQMISCIYPGLLQAEGLI 1343
            SLKQMISC+YPGLLQ E  I
Sbjct: 1142 SLKQMISCVYPGLLQGENFI 1161



 Score =  347 bits (889), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 181/289 (62%), Positives = 200/289 (69%), Gaps = 39/289 (13%)

Query: 286 AIQFGAVRFISTLFAITDCVQPLSYGTSFFAPDNQEIIYLRHSVSCILLEQPESNEDLFV 345
           AIQFGAVRFIS LFAI DC+QP SYG + F PDN+                         
Sbjct: 94  AIQFGAVRFISMLFAIADCIQPFSYGITCFIPDNE------------------------- 128

Query: 346 ATVNLLTSAAYYQPSFIVAIMALEENSEDHSNTSDARLQKNETFVVPLVSKISSLVDALM 405
                        PSFIVAI ALEEN+E H +  DA+LQK ET    +VSK SSLVDALM
Sbjct: 129 -------------PSFIVAIFALEENTEGHLSIGDAKLQKKETSPTTVVSKRSSLVDALM 175

Query: 406 HYIERADDLINSKPCILLCILNFMFALWQGASQYANFLEFLRTREKLWEHLANAILNSAS 465
           HYIERADDLI S P ILLC+LNFM ALWQGA  YAN L+ LR   K WEHLANAI N AS
Sbjct: 176 HYIERADDLIKSNPRILLCVLNFMIALWQGAPHYANLLDALRRHGKFWEHLANAISNIAS 235

Query: 466 CETPLLESLKEKDALNLAYTFRCQSAILGIMAYELFFQKKLLHAESLVKNTAESKDKEQN 525
            E PLL SL+EKDA NLAY F CQS+I GIMAYELF  KKL HAESLVK+ AESKDKEQN
Sbjct: 236 SEIPLLRSLEEKDAFNLAYCFHCQSSIHGIMAYELFLHKKLFHAESLVKDVAESKDKEQN 295

Query: 526 ATKTQKSKATDVPDLKRIWSSWFKEAFLEKLIKSYM-CEFNSDIYHGAK 573
           A+KT+KSKA D+ DLK IWSSWF ++ LEKLIKSY  C +N+DIY GAK
Sbjct: 296 ASKTEKSKAPDLQDLKGIWSSWFNDSILEKLIKSYTSCGYNNDIYGGAK 344



 Score =  171 bits (432), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 103/144 (71%), Gaps = 7/144 (4%)

Query: 120 IQLVETGIENDALLALIIFSFQYVLVNHEYWKYKVKHIRWKITLKVLELVKKCIISRPYN 179
           IQLVETG+E+DALLALIIFS QYVLVNHEYWKYK+KHIRWKITLKVLEL+KKCI S PY 
Sbjct: 1   IQLVETGVEHDALLALIIFSLQYVLVNHEYWKYKMKHIRWKITLKVLELMKKCISSMPYY 60

Query: 180 GKLGEIVHNVLFCDSSIHNMLFQTACTTAHALEKLHISRLFDPLEIEGLQLAIGSVLDIL 239
           GKLGEI++NVLF DSSIHN LFQ  CT AHALE +     F  +    +  AI   +   
Sbjct: 61  GKLGEIINNVLFSDSSIHNTLFQIVCTNAHALEAIQ----FGAVRFISMLFAIADCIQPF 116

Query: 240 SVMLTNLSKDTLSSIPVFLQAVFS 263
           S  +T    D   + P F+ A+F+
Sbjct: 117 SYGITCFIPD---NEPSFIVAIFA 137


>Glyma11g10470.1 
          Length = 652

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/559 (65%), Positives = 401/559 (71%), Gaps = 57/559 (10%)

Query: 771  MVTCIDITCQSFLATIETLSS----------------------VARVWEXXXXXXXXXXX 808
            + T +D  CQSFLAT+ETLSS                         V++           
Sbjct: 125  IFTFMDNICQSFLATVETLSSALDASEDILNFLACQVELLLQLTRTVFKSLALHVSLLVL 184

Query: 809  KCATSGLKILSELKLVPSEANLIMKQXXXXXXXXXQSNSFSSHSGGATNESSSEDFSTVS 868
            KC++SGLK+ S LK +PSEAN+IMK          Q       +        S+ F    
Sbjct: 185  KCSSSGLKLFSALKPLPSEANVIMKLLLTLLLSVGQLMRVLVRT--------SQRFQM-- 234

Query: 869  NATLGLLPILCRCIATSEHCMLSLSVMDVILRVFLVPRTWLPVLQNHLQLQFVMLKLQDK 928
                   P      ATSEHCMLSLSVMD+ILR FL PRTWLPVLQNHLQ+  VMLKL DK
Sbjct: 235  -QPWDYYPFF----ATSEHCMLSLSVMDLILRCFLTPRTWLPVLQNHLQVPIVMLKLDDK 289

Query: 929  KSAA-PTIMKFFLTLARVREGADMLYCSGFLSSLRVLFAESDEAFLRIGSENPGSSSEKF 987
             SA+ P I+KFFLTLARVR GA+MLYCSGFLSS+R LFAES E F RIGSEN GSS EKF
Sbjct: 290  NSASIPIILKFFLTLARVRGGAEMLYCSGFLSSVRALFAESGEDFSRIGSENLGSSCEKF 349

Query: 988  ETLQDIWGLGLAVVTAMVQSLGDSSSGTAIVDSMMPYFFSEKAHLIFDSLNAPDFPSDDH 1047
               QDIWGLGLAVVTAMV+SL D+SSGTAIVDSM+ YFFSEKAHLIF+SLNAPDFPSDDH
Sbjct: 350  VIPQDIWGLGLAVVTAMVKSLRDNSSGTAIVDSMIQYFFSEKAHLIFNSLNAPDFPSDDH 409

Query: 1048 DKKRPRAQRSCISFGNLKETEHTLMLMCELAKHWNSWNKAIKNVDRQLREKCIHLLAFFS 1107
            DKKRP+AQR+ IS   LKETEHTLMLMCELAKHWNSW KAI+NVDR+LREKCIHLLAF S
Sbjct: 410  DKKRPQAQRAWISLATLKETEHTLMLMCELAKHWNSWIKAIRNVDRKLREKCIHLLAFIS 469

Query: 1108 RGTQRLSESSSRNAPLLCPPTVKGDFEIALKPSYINSRNGWFALSPLGCVPKQKTPPFST 1167
            RG+QRL E SSRNAPLLCPPTVK DFEI LKPSY+NSRNGWFALSPLGCVPK K   FST
Sbjct: 470  RGSQRLGELSSRNAPLLCPPTVKEDFEICLKPSYVNSRNGWFALSPLGCVPKPKISSFST 529

Query: 1168 ALSIYDGQAAGSTDAVPKTCFSDTVAVQVYRITYLLLQFLCLQAEGASKRAEEVGFVDLA 1227
            ALS Y GQA  STD  PKT FSDTVA+QVYRI +LLL+FLCLQ E A+KRAEEVGFVDLA
Sbjct: 530  ALSTY-GQATESTDPAPKTGFSDTVALQVYRIAFLLLKFLCLQTECAAKRAEEVGFVDLA 588

Query: 1228 HFPELPMPEILHGLQDQASVIVAELCQANKLRESPETQNVCKLLLQILEMALYLELCVLQ 1287
            HFPELPMPEILHGLQ QA  I  ELC+ANKL+ S ETQ+VC LL              LQ
Sbjct: 589  HFPELPMPEILHGLQGQAIFITTELCEANKLKVSQETQDVCNLL--------------LQ 634

Query: 1288 ICGIRPVLGRVEDFSKGAR 1306
            ICGIRPV G    F KG++
Sbjct: 635  ICGIRPVRG----FFKGSQ 649


>Glyma08g39500.1 
          Length = 232

 Score =  100 bits (248), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 58/71 (81%)

Query: 1179 STDAVPKTCFSDTVAVQVYRITYLLLQFLCLQAEGASKRAEEVGFVDLAHFPELPMPEIL 1238
            +T+   KTCFSD V + +Y+IT+LLL F+CLQ EG  KRA+EVGFVDLAHF ELPM EIL
Sbjct: 107  TTNLASKTCFSDIVVLHLYKITFLLLIFICLQIEGVVKRAKEVGFVDLAHFLELPMSEIL 166

Query: 1239 HGLQDQASVIV 1249
            HGLQ +A++I+
Sbjct: 167  HGLQIKANMIL 177


>Glyma20g20290.1 
          Length = 207

 Score = 90.5 bits (223), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 47/58 (81%)

Query: 1185 KTCFSDTVAVQVYRITYLLLQFLCLQAEGASKRAEEVGFVDLAHFPELPMPEILHGLQ 1242
            K CF DTV +Q+YRI +LLL F+CLQ EGA+KR EEV FVDLA F ELPM EILHGLQ
Sbjct: 80   KACFFDTVVLQLYRIAFLLLNFICLQIEGAAKRVEEVDFVDLALFLELPMSEILHGLQ 137


>Glyma12g24560.1 
          Length = 128

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 51/67 (76%)

Query: 1176 AAGSTDAVPKTCFSDTVAVQVYRITYLLLQFLCLQAEGASKRAEEVGFVDLAHFPELPMP 1235
            A+ +T+ V KT F DT  +Q+YRI +L++ FL LQ EGA+K+ EE  FVD+AHF E PMP
Sbjct: 62   ASETTNPVSKTSFFDTFVLQLYRIPFLVINFLYLQTEGATKKVEEDWFVDIAHFAEFPMP 121

Query: 1236 EILHGLQ 1242
            EILHG+Q
Sbjct: 122  EILHGIQ 128


>Glyma13g00730.1 
          Length = 131

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/44 (75%), Positives = 37/44 (84%)

Query: 1198 RITYLLLQFLCLQAEGASKRAEEVGFVDLAHFPELPMPEILHGL 1241
            RIT+LLL F+CLQ EGASK+ EEVGFVDLA+F E  MP ILHGL
Sbjct: 88   RITFLLLNFICLQIEGASKKTEEVGFVDLAYFLEFSMPTILHGL 131


>Glyma11g31460.1 
          Length = 50

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 2/47 (4%)

Query: 1196 VYRITYLLLQFLCLQAEGASKRAEEVGFVDLAHFPELPMPEILHGLQ 1242
            +YRIT+LLL  + LQ EG +KR +EVGFVDL HF  L  PEILHGL+
Sbjct: 1    LYRITFLLLNIIYLQIEGIAKRIKEVGFVDLIHF--LEPPEILHGLK 45