Miyakogusa Predicted Gene

Lj0g3v0276339.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276339.2 Non Chatacterized Hit- tr|J3NCI5|J3NCI5_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB12G1,48.42,6e-18,RNase_P_p30,RNase P subunit p30; seg,NULL; PHP
domain-like,Polymerase/histidinol phosphatase-like; n,CUFF.18343.2
         (591 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g26680.1                                                       268   1e-71

>Glyma13g26680.1 
          Length = 582

 Score =  268 bits (686), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 144/226 (63%), Positives = 168/226 (74%), Gaps = 8/226 (3%)

Query: 1   MDWTRGQNLVFSSGAPSVNELRGPCDVANLLSLFGLSKEQAKAAISKNCRILLANSLRKK 60
           MDWTRGQN+VFSS AP+VNELRGPCDVANLLSLFGLSKE+A AAISKNCRILLANSLRKK
Sbjct: 198 MDWTRGQNIVFSSAAPTVNELRGPCDVANLLSLFGLSKERANAAISKNCRILLANSLRKK 257

Query: 61  RFFKEAIRVEALPTNAESHSNEAWHQELLKWDPISSGEGDILLDDMEK----PCKAS--C 114
           RF+KE IRVE L ++A SHS E  +QELLKWDPISSGEGDILLDDM+K     CKAS   
Sbjct: 258 RFYKETIRVEVLSSDAASHSKEDRYQELLKWDPISSGEGDILLDDMQKSSLVSCKASKPA 317

Query: 115 KAIDFDSLMAGLSSKGFRIQDSLSTNKVSPVFPNNKVNFLPVTNKENQLTPLLNNVTEQP 174
           KAIDF S++  L S GF I+D L  N   PV  +NK+NF PV  K +Q T + NN+TE+ 
Sbjct: 318 KAIDFASVVKSLPSHGFEIKDILPANNAFPVCGDNKINFPPVAEKLSQSTHVPNNLTEKS 377

Query: 175 NRLDICPEQHESSLSVDITTRRV-SCDTFSEKNLQCETTEAFNSKE 219
           N L +CPEQ E+S+   IT  ++  CD   E N+   TT+A N KE
Sbjct: 378 NIL-VCPEQDENSVPDAITRGQILRCDNIFENNICSGTTDAVNLKE 422



 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 93/143 (65%), Gaps = 20/143 (13%)

Query: 436 DKHNNEKSSDVNLNAKIVKIQEILPSEDSEVAENMVLEIKTSTHETSVEDALFDKRETDA 495
           DK NNEKSSDVNLN +I +I E LP+ED ++AE  VLE+ TS  +TS+E    DKRETDA
Sbjct: 445 DKCNNEKSSDVNLNEQIGRICEALPNEDLKIAEQPVLELNTSISDTSME----DKRETDA 500

Query: 496 VELDEMPQQTPFDEMQTEGDDTVPTMHLLPVTMEDNNKLGEMSTDS-QFAAGQALSGRLR 554
           +ELDEM  +          DD+    HLLP  +  + +L E+STDS QFA     SG LR
Sbjct: 501 LELDEMKME----------DDSTAAKHLLPDVIMKDKRLSEVSTDSDQFA-----SGGLR 545

Query: 555 VKRRTSRGPLLFPLKRLLNQMPF 577
           VKRRT +G  LFP +RLLN  PF
Sbjct: 546 VKRRTPQGLPLFPFRRLLNPTPF 568



 Score = 87.8 bits (216), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/164 (39%), Positives = 88/164 (53%), Gaps = 27/164 (16%)

Query: 236 DSDVPMDDMEKSFSTSCETSKTAEDIDFVSVDNSLPSHDFRTMDFLPANYVYPILPCNKG 295
           + D+ +DDM+KS   SC+ SK A+ IDF SV  SLPSH F   D LPAN  +P+   NK 
Sbjct: 295 EGDILLDDMQKSSLVSCKASKPAKAIDFASVVKSLPSHGFEIKDILPANNAFPVCGDNKI 354

Query: 296 SLLPVSGKVNQSSPVSDNSTELPNKHDVCPQQDERSLYD--------------KKDLHSG 341
           +  PV+ K++QS+ V +N TE  N   VCP+QDE S+ D              + ++ SG
Sbjct: 355 NFPPVAEKLSQSTHVPNNLTEKSNIL-VCPEQDENSVPDAITRGQILRCDNIFENNICSG 413

Query: 342 TIEAFNSKK-----EIDTQTNATKLEKLNFID-------SDVNV 373
           T +A N K+      ID+ + A  L    F D       SDVN+
Sbjct: 414 TTDAVNLKETNTPAAIDSISVAEGLPSPGFHDKCNNEKSSDVNL 457