Miyakogusa Predicted Gene
- Lj0g3v0276279.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0276279.1 tr|O65659|O65659_ARATH At4g39720 OS=Arabidopsis
thaliana GN=AT4g39720 PE=2 SV=1,39.91,2e-18,seg,NULL;
VQ,VQ,CUFF.18324.1
(433 letters)
Database: Glyma1.pep
75,778 sequences; 25,431,882 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Glyma18g02140.1 209 4e-54
Glyma11g38180.2 182 7e-46
Glyma11g38180.1 161 1e-39
Glyma08g14580.1 116 4e-26
Glyma05g31340.1 113 5e-25
Glyma14g34680.1 94 4e-19
Glyma04g11200.1 83 5e-16
Glyma06g10960.1 59 1e-08
Glyma06g10950.1 53 7e-07
Glyma09g05700.1 51 2e-06
Glyma17g23210.1 50 6e-06
>Glyma18g02140.1
Length = 454
Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 192/422 (45%), Positives = 221/422 (52%), Gaps = 90/422 (21%)
Query: 71 HHFDPFSNYLDSIQTSP------NLDMVWSRSSSAAVRTEPNQSDL----------SNNQ 114
H FDP SNYLD Q P NLDMVWS+ A R++P S +NNQ
Sbjct: 64 HVFDPLSNYLDPTQRPPQSNQILNLDMVWSK---VAARSDPGLSSFVPSSSPHNNNNNNQ 120
Query: 115 AFLLNQF-AAGAATVP---GSQQLSMPPEXX----------XXXXXXXXXXXXXVRNPKK 160
AFLL Q AG + P G +++ P VRNPKK
Sbjct: 121 AFLLTQLGGAGGQSQPRGGGVNNVAVFPSTTLPLESGGGLPVNEQVNSSSTNTVVRNPKK 180
Query: 161 RSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFS---SSHFPRTRLDLFGASSAA--- 214
RSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPF+ SS FPRTRLDLF +S++
Sbjct: 181 RSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTSSSSSSFPRTRLDLFASSNSIASS 240
Query: 215 ---------SSTPPYLLRPFAQKIKXXXXXXXXXXXXXXXXXXINYLXXXXXXXFPLNMQ 265
+ TPPYLLRPFA K++ NY LNMQ
Sbjct: 241 SSSSIIREQTQTPPYLLRPFAHKVQAQLPSSIPPPSSFPPMLN-NYQQHS------LNMQ 293
Query: 266 NN---TFQSIVQAPQKYSIGNSSLVSPKTQS-SLEIPPATVD-SHLKMSVMEGLGLMSHA 320
N +FQSI+Q PQ L+ KTQ SLEIPP+ VD SHLKM +E LGL S+A
Sbjct: 294 QNPILSFQSILQ-PQP-------LIGSKTQQPSLEIPPSAVDSSHLKMGGLEELGL-SNA 344
Query: 321 HVNTQIGSLHQ--NMVPSSSDEGALLSRINNIH----NSSGNWAQRMGANAIANNDGDHH 374
H G HQ NMV SSSD LSR+ N + SS +WA A I NND
Sbjct: 345 H----DGGHHQNFNMVSSSSD--GALSRVTNSNMRGGPSSADWALSQ-AQRIDNND---- 393
Query: 375 GGVFLGSLGGRSSNIIXXXXXXX---XXXXXXXDFHGEKGPERVVAARSEGTVESWINCS 431
GGV L SLGG ++ + DFHG+KGPE VAARSEG VESWINCS
Sbjct: 394 GGV-LRSLGGATATLNYRSNVSDPRVKVTNNNSDFHGDKGPECAVAARSEGMVESWINCS 452
Query: 432 SE 433
S+
Sbjct: 453 SD 454
>Glyma11g38180.2
Length = 425
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 196/473 (41%), Positives = 223/473 (47%), Gaps = 88/473 (18%)
Query: 1 MDSANSGSMQSSSTGXXXXXXXXXXXXXXXXXFLXXXXXXXXXXXXXXXXXXXXXXVGVG 60
MDS NSGSMQSSST + VG
Sbjct: 1 MDSGNSGSMQSSSTAGDEEYDSRADPSLSSS--ISAFFNSNSHPSAPPQPTTLTNHVGPP 58
Query: 61 GLFNHHLNAAHHFDPFS-NYLDSIQTSP------NLDMVWSRSSSAAVRTEPNQSDL--- 110
HH H FDP S NYLD Q SP NLDMV S+ A R+ P+ S
Sbjct: 59 FSTQHH----HVFDPLSSNYLDPTQRSPQSNQILNLDMVRSK---VAARSGPDFSSFIPS 111
Query: 111 -----SNNQAFLLNQFAAGAATVPGS-QQLSMPPEX------XXXXXXXXXXXXXXVRNP 158
+NNQAFLL Q G G+ ++PPE VRNP
Sbjct: 112 SSPHNNNNQAFLLTQLGGGGVNNVGAFPSTTLPPESGGGGLVMNEQVNSSNTNKNMVRNP 171
Query: 159 KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPA--PPFSSSHFPRTRLDLFGASSAASS 216
KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPA SSS FPRTRLDLF S+A+SS
Sbjct: 172 KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTSSSSSFPRTRLDLFATSNASSS 231
Query: 217 ------TPPYLLRPFAQKIKXXXXXXXXXXXXXXXXXXINYLXXXXXXXFPLNMQNNTFQ 270
TP YLLRPFA K++ NY L +FQ
Sbjct: 232 SIIREQTPSYLLRPFAHKVQAQVPSSIPPPSSFQPMLN-NYHHHHHQHNPIL-----SFQ 285
Query: 271 SIVQAPQKYSIGNSSLVSPKTQS--SLEIPPATVDSHLKMSVMEGLGLMSHAHVNTQIGS 328
SI+Q Q L+ KTQ SLEIPP+ + +E LGL +HAH
Sbjct: 286 SILQPHQ--------LIGSKTQQQPSLEIPPSALG-------LEELGL-NHAH------- 322
Query: 329 LHQNMVPSSSDEGALLSRINNIHNS----SGNWAQRMGANAIANNDGDHHGGVFLGSLGG 384
HQN+ SS LSR+NN +N+ S +WAQ A I NNDG LGSL G
Sbjct: 323 -HQNINMRSSSSDGTLSRVNNDNNNMRGPSADWAQAQ-AQRIDNNDGG-----LLGSLTG 375
Query: 385 RS----SNIIXXXXXXXXXXXXXXDFHGEKGPERVVAARSEGTVESWINCSSE 433
+ SNI+ DFHGEKGPE VVA RSEG VESWINCSS+
Sbjct: 376 ATLNYRSNIV---SDQRVKVTNNSDFHGEKGPECVVAVRSEGMVESWINCSSD 425
>Glyma11g38180.1
Length = 439
Score = 161 bits (407), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 187/465 (40%), Positives = 215/465 (46%), Gaps = 82/465 (17%)
Query: 1 MDSANSGSMQSSSTGXXXXXXXXXXXXXXXXXFLXXXXXXXXXXXXXXXXXXXXXXVGVG 60
MDS NSGSMQSSST + VG
Sbjct: 1 MDSGNSGSMQSSSTAGDEEYDSRADPSLSSS--ISAFFNSNSHPSAPPQPTTLTNHVGPP 58
Query: 61 GLFNHHLNAAHHFDPFS-NYLDSIQTSP------NLDMVWSRSSSAAVRTEPNQSDL--- 110
HH H FDP S NYLD Q SP NLDMV S+ A R+ P+ S
Sbjct: 59 FSTQHH----HVFDPLSSNYLDPTQRSPQSNQILNLDMVRSK---VAARSGPDFSSFIPS 111
Query: 111 -----SNNQAFLLNQFAAGAATVPGS-QQLSMPPEX------XXXXXXXXXXXXXXVRNP 158
+NNQAFLL Q G G+ ++PPE VRNP
Sbjct: 112 SSPHNNNNQAFLLTQLGGGGVNNVGAFPSTTLPPESGGGGLVMNEQVNSSNTNKNMVRNP 171
Query: 159 KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPA--PPFSSSHFPRTRLDLFGASSAASS 216
KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPA SSS FPRTRLDLF S+A+SS
Sbjct: 172 KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFTSSSSSFPRTRLDLFATSNASSS 231
Query: 217 ------TPPYLLRPFAQKIKXXXXXXXXXXXXXXXXXXINYLXXXXXXXFPLNMQNNTFQ 270
TP YLLRPFA K++ NY L +FQ
Sbjct: 232 SIIREQTPSYLLRPFAHKVQAQVPSSIPPPSSFQPMLN-NYHHHHHQHNPIL-----SFQ 285
Query: 271 SIVQAPQKYSIGNSSLVSPKTQS--SLEIPPATVDSHLKMSVMEGLGLMSHAHVNTQIGS 328
SI+Q Q L+ KTQ SLEIPP+ + +E LGL +HAH
Sbjct: 286 SILQPHQ--------LIGSKTQQQPSLEIPPSALG-------LEELGL-NHAH------- 322
Query: 329 LHQNMVPSSSDEGALLSRINNIHNS----SGNWAQRMGANAIANNDGDHHGGVFLGSLGG 384
HQN+ SS LSR+NN +N+ S +WAQ A I NNDG G + +L
Sbjct: 323 -HQNINMRSSSSDGTLSRVNNDNNNMRGPSADWAQAQ-AQRIDNNDGGLLGSLTGATLNY 380
Query: 385 RSSNIIXXXXXXXXXXXXXXDFHGEKGPERVVAARSEGT--VESW 427
R SNI+ DFHGEKGPE VVA RSE +ESW
Sbjct: 381 R-SNIV---SDQRVKVTNNSDFHGEKGPECVVAVRSEAIYELESW 421
>Glyma08g14580.1
Length = 323
Score = 116 bits (291), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/151 (54%), Positives = 95/151 (62%), Gaps = 20/151 (13%)
Query: 63 FNHHLNAAHHFDPFSNYLDSIQTSP----NLDMVWSRSSSAAVRTEPNQSDL----SNNQ 114
HH N H FDP SNYLD I S NLD++WS+ VR+EPNQ+DL +NQ
Sbjct: 57 LQHHQNT-HMFDPLSNYLDPIPQSSASLLNLDVMWSKQ----VRSEPNQTDLVSLIPHNQ 111
Query: 115 AFLLNQFAAG-AATVPGSQQLSMPPEXXXXXXXXXXXXXXXVRNPKKRSRASRRAPTTVL 173
AF+ +Q + P ++PPE VRNPKKRSRASRRAPTTVL
Sbjct: 112 AFVSSQTRGNNSGAFP-----TLPPESGSRGLMLSVSSNM-VRNPKKRSRASRRAPTTVL 165
Query: 174 TTDTTNFRAMVQEFTGIPAPPFSSSHFPRTR 204
TTDTTNFRAMVQEFTGIPA PF+SS FPRTR
Sbjct: 166 TTDTTNFRAMVQEFTGIPAQPFTSSSFPRTR 196
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 85/157 (54%), Gaps = 38/157 (24%)
Query: 289 PKTQS----SLEIPPATVDSHLKMSVMEGLGLMSHAHVNTQIGSLHQNMVPSSS-DEGAL 343
P+T++ SLEIPP +LK V E LGL H HVNT +G LHQ+MV S+S GAL
Sbjct: 193 PRTRTQQHHSLEIPP-----NLKNGVFEELGLR-HDHVNTDLGCLHQSMVSSTSVGVGAL 246
Query: 344 LSRINNIHNSSG------NWAQRMGANAIANNDGDHHGGVFLGSLGGRSSNIIXXXXXXX 397
S NN +N S WAQR G I NND DH GG G+L G
Sbjct: 247 SSGNNNNNNLSNATNSSTEWAQRTG--TITNNDCDHGGG---GALSG------------- 288
Query: 398 XXXXXXXDFHGEKGPE-RVVAARSEGTVESWINCSSE 433
D +G+KGP+ V A R++G VESWINCSS+
Sbjct: 289 --TINYSDTNGKKGPDFTVTATRTQGMVESWINCSSD 323
>Glyma05g31340.1
Length = 244
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/187 (47%), Positives = 109/187 (58%), Gaps = 38/187 (20%)
Query: 71 HHFDPFSNYLDSIQTSP----NLDMVWSRSSSAAVRTEPNQSDLSNNQAFLLNQF----A 122
H FDP SNYLD I S NLD++WS++ + +N+AF+ +Q +
Sbjct: 63 HMFDPLSNYLDPITQSSTSLLNLDVMWSKTVPSP-----------HNEAFVSSQTRGNNS 111
Query: 123 AGAATVP---GSQQLSM---PPEXXXXXXXXXXXXXXXVRNPKKRSRASRRAPTTVLTTD 176
T+P GS+ L + VRNPKKRSRASRRAPTTVLTTD
Sbjct: 112 GAFPTLPPESGSRGLMLSVSAANNDQIQTHNNNNNCNVVRNPKKRSRASRRAPTTVLTTD 171
Query: 177 TTNFRAMVQEFTGIPAPPFSSSHFPRTRLDLFGASSAAS-------------STPPYLLR 223
TTNFRAMVQEFTGIPAPPF+SS FPRTRLDLF +++ + + PPYLLR
Sbjct: 172 TTNFRAMVQEFTGIPAPPFTSSSFPRTRLDLFASTATPTLRSNVNVNPFDPPTQPPYLLR 231
Query: 224 PFAQKIK 230
PFAQK++
Sbjct: 232 PFAQKLQ 238
>Glyma14g34680.1
Length = 230
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 58/81 (71%), Gaps = 8/81 (9%)
Query: 156 RNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFSSSHFPRTRLDLFGASSA-- 213
RN KKR+RASRRAPTTVLTTDT+NFRAMVQEFTGIPAPPFS+S RLDL SS+
Sbjct: 150 RNSKKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPAPPFSASSSYSRRLDLLTGSSSLR 209
Query: 214 ------ASSTPPYLLRPFAQK 228
++ P Y LRP QK
Sbjct: 210 SFSHLDTTTGPFYPLRPSPQK 230
>Glyma04g11200.1
Length = 268
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 39/44 (88%), Positives = 41/44 (93%)
Query: 155 VRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFSSS 198
+RN KKRSRASRRAPTTVLTTDT NFR+MVQEFTGIPAPPFS S
Sbjct: 93 IRNSKKRSRASRRAPTTVLTTDTNNFRSMVQEFTGIPAPPFSPS 136
>Glyma06g10960.1
Length = 295
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/30 (90%), Positives = 28/30 (93%)
Query: 161 RSRASRRAPTTVLTTDTTNFRAMVQEFTGI 190
SRASRRAPTTVLTTDT NFR+MVQEFTGI
Sbjct: 107 ESRASRRAPTTVLTTDTNNFRSMVQEFTGI 136
>Glyma06g10950.1
Length = 241
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/44 (81%), Positives = 38/44 (86%), Gaps = 4/44 (9%)
Query: 155 VRNPKKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIPAPPFSSS 198
VRN KKRSR+SRRAPTT DT NFR+MVQEFTGIPAPPFSSS
Sbjct: 63 VRNSKKRSRSSRRAPTT----DTNNFRSMVQEFTGIPAPPFSSS 102
>Glyma09g05700.1
Length = 250
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 159 KKRSRASRRAPTTVLTTDTTNFRAMVQEFTGIP 191
++RSRAS+R PTT+L + TNFRA+VQ+FTG P
Sbjct: 78 RRRSRASKRTPTTLLNANPTNFRALVQQFTGCP 110
>Glyma17g23210.1
Length = 109
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 155 VRNPKKRSRASRRAPTTVLTTDTTNFRAM 183
+RN KKRSRASR APTTVLTTDT NFR M
Sbjct: 81 LRNLKKRSRASRLAPTTVLTTDTNNFRPM 109