Miyakogusa Predicted Gene

Lj0g3v0276039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0276039.1 Non Chatacterized Hit- tr|I1J4E4|I1J4E4_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.18187
PE,88.53,0,SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL;
Mnd1,Meiotic nuclear division protein 1; coiled-coi,CUFF.18308.1
         (218 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma01g00780.1                                                       403   e-113

>Glyma01g00780.1 
          Length = 218

 Score =  403 bits (1036), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 194/218 (88%), Positives = 207/218 (94%)

Query: 1   MSKKRGLSLEEKREKMLQIFYESQDFYLLKELEKMGPRKGVIAQSVKDVIQSLVDDDLVS 60
           MSKKRGLSLEEKREKMLQIFYESQDFYLLKELEKMGPRKGVI+QSVKDV+QSLVDDDLVS
Sbjct: 1   MSKKRGLSLEEKREKMLQIFYESQDFYLLKELEKMGPRKGVISQSVKDVVQSLVDDDLVS 60

Query: 61  KDKIGTSVYFWSLPSCAGNQLRNVTCKLDSELQGSKNRHSQLVEQCETLKKGREESDERE 120
           KDKIGTSVYFWSLPSCAGNQLRNV+ KLDS+L+ SK RH+QLV+QCE LKKGREESDER 
Sbjct: 61  KDKIGTSVYFWSLPSCAGNQLRNVSRKLDSDLESSKKRHAQLVDQCEELKKGREESDERV 120

Query: 121 VALADLKAIELKHKELKDELAKFRDNDPAAFEAMKDAIGVAHASANRWTDNIFTLKQWCT 180
            A+ADLKAIE KH ELKDELAK++DNDPAAFEAMK+AI VAHASANRWTDNIFTL+QWC+
Sbjct: 121 EAIADLKAIEQKHNELKDELAKYKDNDPAAFEAMKEAIAVAHASANRWTDNIFTLRQWCS 180

Query: 181 NNFPQAKEQLENLYKEVGITDDFDYLELAPVLLKAVAD 218
           NNFPQAKEQLENLYKEVGITDDFDYLELAPV LK VAD
Sbjct: 181 NNFPQAKEQLENLYKEVGITDDFDYLELAPVPLKTVAD 218