Miyakogusa Predicted Gene

Lj0g3v0274949.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274949.1 tr|B9HPB5|B9HPB5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_650211 PE=4
SV=1,43.75,7e-19,seg,NULL,CUFF.18220.1
         (154 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g34650.1                                                       127   6e-30
Glyma18g03740.1                                                       126   1e-29

>Glyma11g34650.1 
          Length = 163

 Score =  127 bits (318), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 81/161 (50%), Gaps = 11/161 (6%)

Query: 5   NNRKKVXXXXXXXXXPTNFDHLFGPKDPXXXXXXXXXXFGSMF-PPPSTAGRRDPIKQDM 63
           NN+KKV          TNFDHLFGPKDP          FGS+F PPPST G RD  KQDM
Sbjct: 3   NNKKKVVGGGPSSSSFTNFDHLFGPKDPSTTSSSSTSIFGSIFPPPPSTVGGRDSTKQDM 62

Query: 64  GTKNYGAPG---------KXXXXXXXXXXXXXXXXYQNETVEPXXXXXXXXXGGQENYSP 114
           G KNYGAPG                          +QNETVEP         GGQENYSP
Sbjct: 63  GCKNYGAPGNYSYKGESSASGVVSNSKNTTSTNYHHQNETVEPSYYSSSIYYGGQENYSP 122

Query: 115 RTRTTESQQNFXXXXXXXXX-XXXXXXXASRGNWWQGSLYY 154
           RTRTTES  +F                 ASRGNWWQGSLYY
Sbjct: 123 RTRTTESHHSFKKDKKDDDDPNGNDSNSASRGNWWQGSLYY 163


>Glyma18g03740.1 
          Length = 158

 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/157 (47%), Positives = 78/157 (49%), Gaps = 8/157 (5%)

Query: 5   NNRKKVXXXXXXXXXPTNFDHLFGPKDPXXXXXXXXXXFGSMFPPPSTAGRRDPIKQDMG 64
           NN+KKV          TNFDHLFGPKDP          FGS+FPPPST G RD  KQD G
Sbjct: 3   NNKKKVGGGSSSSSF-TNFDHLFGPKDPSTTSSSSTSIFGSIFPPPSTVGGRDSTKQDTG 61

Query: 65  TKNYGAPGKXXXXXXXXXXXXXXXX-------YQNETVEPXXXXXXXXXGGQENYSPRTR 117
            KNYGAPG                        +QNETVEP         GGQENYSPRTR
Sbjct: 62  CKNYGAPGNYSYKGESSASGVSNNNNTTSTNYHQNETVEPSYYSSSIHYGGQENYSPRTR 121

Query: 118 TTESQQNFXXXXXXXXXXXXXXXXASRGNWWQGSLYY 154
           TTES                    ASRGNWWQGSLYY
Sbjct: 122 TTESHHIVKKDKDDDDPNGNDSNSASRGNWWQGSLYY 158