Miyakogusa Predicted Gene

Lj0g3v0274089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0274089.1 tr|C1MLL0|C1MLL0_MICPC WD40 repeat
domain-containing protein OS=Micromonas pusilla (strain
CCMP1545),21.02,7e-17,SUBFAMILY NOT NAMED,NULL; WD REPEAT
PROTEIN,NULL; no description,WD40/YVTN repeat-like-containing
do,CUFF.18181.1
         (590 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma19g40800.1                                                       908   0.0  

>Glyma19g40800.1 
          Length = 1138

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/590 (76%), Positives = 501/590 (84%), Gaps = 38/590 (6%)

Query: 1   MFSIGIPNVVEHIGLMDSKSEYVRCLRFSCQDSLYVATNHGYLYHAKLCDTGGAQWNQLV 60
           MFSI IPNV+ H G MDSKSEYVRCLRFSCQDSLYVATNHGYLY AKLCDTGGAQWNQLV
Sbjct: 203 MFSICIPNVLNHSGFMDSKSEYVRCLRFSCQDSLYVATNHGYLYLAKLCDTGGAQWNQLV 262

Query: 61  QVSNRTPIICMDLLSKDSFKLDYGAEDWIAIGDGKGNMTVLGVSNDGCTPSVRLSFTWKA 120
           QVSN  PIICMDLLSKDSF+LD GAEDWIAIGDGKGNMTV+GVSND CTP+VRL FTW A
Sbjct: 263 QVSNGAPIICMDLLSKDSFELDCGAEDWIAIGDGKGNMTVIGVSNDDCTPTVRLCFTWPA 322

Query: 121 EIERQLLGTYWCKSLGCRYIFTADPRGRLKLWRLPDPSESDLESFMRCNSVSQIAEFISS 180
           E+ERQLLGTYWCKSLG      +DPRG LKLWRLPDPS+SDL S MR N+VS IAEF S+
Sbjct: 323 EMERQLLGTYWCKSLG------SDPRGTLKLWRLPDPSQSDLPSSMRSNNVSCIAEFTSN 376

Query: 181 YGMRIMCLDICLEEEVLACGDVRGNMLIFPLLKDLVLGTSVAPEMKIPPVNHFKGVHGIS 240
           YGMRIMCLD C+EEEVLACGDVRGNM++FPLLK+LVLG S A EMKIPPVNHFKGVHGIS
Sbjct: 377 YGMRIMCLDACMEEEVLACGDVRGNMVLFPLLKNLVLGISAAQEMKIPPVNHFKGVHGIS 436

Query: 241 SVSSIFVTRIGYNQIEICSTGADGCICYLEYDREMQNLQFTGMKQVKELTLIEYVSMD-N 299
           SVSS+ VT++GYNQIEICSTGADGCICYLE+D+EMQNLQFTGMKQVK L+LIEYVS+D N
Sbjct: 437 SVSSVSVTKLGYNQIEICSTGADGCICYLEFDKEMQNLQFTGMKQVKGLSLIEYVSVDNN 496

Query: 300 ALDTLSGSYAAGFASVDFIIWNLVNENMVVKIPCGGWRRPHSYYLGDVPEMKNCFAYVKD 359
           + D LS SYAAGFASVDFI+WNL NEN                               KD
Sbjct: 497 SGDKLSSSYAAGFASVDFIVWNLANEN-------------------------------KD 525

Query: 360 EMIHIHRHWLHDRDKKIYPQSLHMQFHGREIHSLCFISEDMLLRDNYKHALVSKSSWIAT 419
           EMI+IHRHW+H+RD K+YPQSLHMQFHGREIHSLCFIS+D+L+ DNYK AL SKSSWIAT
Sbjct: 526 EMINIHRHWIHNRDGKVYPQSLHMQFHGREIHSLCFISDDVLVGDNYKCALFSKSSWIAT 585

Query: 420 GCEDGTVRLTWYSSGIENWSMSKLLGEHVGGSAVRSICCVSKLHTFSSDTTDVPNGRSEV 479
           GCEDGTVRLTWYS GIENWS SKLLGEHVGGSAVRSICCVSK++T SSDT +VP+GR E+
Sbjct: 586 GCEDGTVRLTWYSPGIENWSTSKLLGEHVGGSAVRSICCVSKVYTISSDTGNVPDGRIEL 645

Query: 480 NAADKDKDSPTLLISVGAKRVITSWLLKTTSRDSKNDFLTDHQYNSKGVDDKFVSSLSSS 539
           NAA ++ D+PTLLISVGAKRV+TSW+LK    D+KNDF+TDHQ NS+GVDD+F+S+ SSS
Sbjct: 646 NAAVENNDNPTLLISVGAKRVLTSWILKNRRLDNKNDFVTDHQCNSEGVDDQFLSNFSSS 705

Query: 540 MTFQWLSTDMPAKYSTTYKYPENNVKKVVGVAENVSNTKTDAEPGSLVPD 589
           MTFQWLSTDMPAKYS T+  PENNV+K+VG+AENVSNT +DA  GSLV +
Sbjct: 706 MTFQWLSTDMPAKYSITHNTPENNVEKIVGIAENVSNTNSDARMGSLVSE 755