Miyakogusa Predicted Gene

Lj0g3v0273249.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0273249.1 Non Chatacterized Hit- tr|I1MMQ7|I1MMQ7_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.9693
PE=,90.48,1e-16,ACTIN-RELATED PROTEIN,NULL;
ACTIN,Actin-like,gene.Ljchr0_pseudomol_20120828.path1.gene28025.1
         (61 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma16g19540.1                                                        91   3e-19
Glyma04g12490.2                                                        79   1e-15
Glyma04g12490.1                                                        75   2e-14

>Glyma16g19540.1 
          Length = 469

 Score = 90.9 bits (224), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/42 (90%), Positives = 41/42 (97%)

Query: 1   MSLHQAIALCMDHCYSAELAGNNDWFKTIVLSGGTACLPGLA 42
           M LHQAIALC+DHCYSAELAGNNDW+KT+VLSGGTACLPGLA
Sbjct: 363 MGLHQAIALCVDHCYSAELAGNNDWYKTVVLSGGTACLPGLA 404


>Glyma04g12490.2 
          Length = 477

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 33/42 (78%), Positives = 40/42 (95%)

Query: 1   MSLHQAIALCMDHCYSAELAGNNDWFKTIVLSGGTACLPGLA 42
           M LHQAIALC++HC+SA+LA ++DW+KTIVLSGGTACLPGLA
Sbjct: 371 MGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLA 412


>Glyma04g12490.1 
          Length = 496

 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 33/42 (78%), Positives = 40/42 (95%)

Query: 1   MSLHQAIALCMDHCYSAELAGNNDWFKTIVLSGGTACLPGLA 42
           M LHQAIALC++HC+SA+LA ++DW+KTIVLSGGTACLPGLA
Sbjct: 371 MGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLA 412