Miyakogusa Predicted Gene

Lj0g3v0272389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272389.1 tr|A9BCN6|A9BCN6_PROM4 50S ribosomal protein L24
OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl,47.57,4e-19,KOW
(Kyprides, Ouzounis, Woese) motif.,KOW; rplX_bact: ribosomal protein
L24,Ribosomal protein L24; ,CUFF.18010.1
         (193 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g36150.1                                                       288   3e-78
Glyma12g34400.1                                                       286   1e-77
Glyma12g34400.2                                                       253   9e-68
Glyma03g09890.1                                                       126   2e-29
Glyma17g31080.2                                                        65   4e-11
Glyma17g31080.1                                                        65   4e-11
Glyma07g29720.1                                                        62   4e-10
Glyma02g16450.1                                                        58   5e-09
Glyma10g03380.1                                                        49   3e-06
Glyma18g14560.1                                                        48   5e-06

>Glyma13g36150.1 
          Length = 194

 Score =  288 bits (737), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 133/165 (80%), Positives = 153/165 (92%)

Query: 21  FFGQRLSPITLSPRLPGKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKII 80
           F GQRLSPITL   LPGKS +KQCPIVM+LKRWERK+CKPNSLPILHKMHVKLGDTV++I
Sbjct: 21  FLGQRLSPITLPSLLPGKSTEKQCPIVMRLKRWERKECKPNSLPILHKMHVKLGDTVQVI 80

Query: 81  SGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHSSNLMLYS 140
           SG E+GK+GE+ ++FKHNSTVIVKD+NLKTKHVKS+EEGEPGQI+K+EGPIHSSN+MLYS
Sbjct: 81  SGRERGKVGEITKIFKHNSTVIVKDLNLKTKHVKSREEGEPGQIIKIEGPIHSSNVMLYS 140

Query: 141 KEKNVASRVGHKVLDNGKSVRYLIKTGEIIDTTENWEKLKEGKKK 185
           K++ VASRVGHKVLDNGK VRYLIKTGEIID+ ENW+KLKE  K+
Sbjct: 141 KDQKVASRVGHKVLDNGKKVRYLIKTGEIIDSAENWKKLKEATKQ 185


>Glyma12g34400.1 
          Length = 194

 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 133/168 (79%), Positives = 154/168 (91%)

Query: 21  FFGQRLSPITLSPRLPGKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKII 80
           F GQ L PITL   LPGKS +KQCPIVM+LKRWERK+CKPNSLPILHKMHVKLGDTV++I
Sbjct: 21  FLGQLLPPITLPSLLPGKSTEKQCPIVMRLKRWERKECKPNSLPILHKMHVKLGDTVQVI 80

Query: 81  SGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHSSNLMLYS 140
           SG E+GK+GE+ ++FKHNSTVIVKD+NLKTKHVKS+EEGEPGQI+K+EGPIHSSN+MLYS
Sbjct: 81  SGRERGKVGEITKIFKHNSTVIVKDLNLKTKHVKSREEGEPGQIIKIEGPIHSSNVMLYS 140

Query: 141 KEKNVASRVGHKVLDNGKSVRYLIKTGEIIDTTENWEKLKEGKKKTAE 188
           K++ VASRVGHKVLDNGK VRYLIKTGEIID++ENW+KLKE  KK+ E
Sbjct: 141 KDQKVASRVGHKVLDNGKKVRYLIKTGEIIDSSENWKKLKEATKKSEE 188


>Glyma12g34400.2 
          Length = 181

 Score =  253 bits (646), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 120/168 (71%), Positives = 142/168 (84%), Gaps = 13/168 (7%)

Query: 21  FFGQRLSPITLSPRLPGKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKII 80
           F GQ L PITL   LPGKS +KQCPIVM+LKRWERK+CKPNSLPILHKMHVKLGDTV++I
Sbjct: 21  FLGQLLPPITLPSLLPGKSTEKQCPIVMRLKRWERKECKPNSLPILHKMHVKLGDTVQVI 80

Query: 81  SGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHSSNLMLYS 140
           SG E+GK+GE+ ++FKHNSTVIVKD+NLKTKHVKS+EEGEPGQI+K+EGPIHSSN+MLYS
Sbjct: 81  SGRERGKVGEITKIFKHNSTVIVKDLNLKTKHVKSREEGEPGQIIKIEGPIHSSNVMLYS 140

Query: 141 KEKNVASRVGHKVLDNGKSVRYLIKTGEIIDTTENWEKLKEGKKKTAE 188
           K++ VA             +RYLIKTGEIID++ENW+KLKE  KK+ E
Sbjct: 141 KDQKVA-------------IRYLIKTGEIIDSSENWKKLKEATKKSEE 175


>Glyma03g09890.1 
          Length = 287

 Score =  126 bits (316), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/98 (63%), Positives = 77/98 (78%), Gaps = 5/98 (5%)

Query: 37  GKSADKQCPIVMKLKRWERKKCKPNSLPILHKMHVKLGDTVKIISGHEKGKIGEVVRLFK 96
           GKS +KQCPIVM LKRWERK+CKPNSLPILHKM        K     + GK+GE+ ++FK
Sbjct: 58  GKSTEKQCPIVMSLKRWERKECKPNSLPILHKMQEM---RCKSYLDEKGGKVGEITKIFK 114

Query: 97  HNSTVIVKDMNLKTKHVKSKEEGEPGQILKV--EGPIH 132
           H+++VIVKD+NLKTKHVKS+EEGE GQI+K+  +GP H
Sbjct: 115 HDNSVIVKDLNLKTKHVKSREEGELGQIIKLSSQGPTH 152


>Glyma17g31080.2 
          Length = 159

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V II G +KG+ G + R+ +  + VIV+  NL  KH+K + +G  G I  VE PIH+
Sbjct: 18  GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVR 161
           SN+ +         ++GHK L++G  VR
Sbjct: 77  SNVQVLDPVTGKPCKIGHKYLEDGTKVR 104


>Glyma17g31080.1 
          Length = 159

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V II G +KG+ G + R+ +  + VIV+  NL  KH+K + +G  G I  VE PIH+
Sbjct: 18  GDNVMIIRGKDKGETGTIKRVIRSQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVR 161
           SN+ +         ++GHK L++G  VR
Sbjct: 77  SNVQVLDPVTGKPCKIGHKYLEDGTKVR 104


>Glyma07g29720.1 
          Length = 159

 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 1/88 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V II G +KG+ G + R+ +  + VIV+  NL  KH+K + +G  G I  VE PIH+
Sbjct: 18  GDNVMIIRGKDKGETGNIKRVIRTQNRVIVEGKNLVKKHIK-QGQGHEGGIFTVEAPIHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVR 161
           SN+ +         +VG K L++G  VR
Sbjct: 77  SNVQVIDPVTRKPCKVGTKYLEDGSKVR 104


>Glyma02g16450.1 
          Length = 159

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 1/88 (1%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V I  G +KG+ G + R+ +  + VIV+  NL  KH+K + +G  G I  VE P+H+
Sbjct: 18  GDNVMITRGKDKGETGIIKRVIRSQNRVIVESKNLVKKHIK-QGQGHEGGIFTVEAPLHA 76

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVR 161
           SN+ +         +VG K L++G  VR
Sbjct: 77  SNVQVLDPVTGKPCKVGVKYLEDGTKVR 104


>Glyma10g03380.1 
          Length = 170

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 2/96 (2%)

Query: 65  ILHKMHVKLGDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQI 124
           ++ +  +  GD V I  G +KG+ G + R+    + VIV+  NL  KH+K + +G  G I
Sbjct: 9   LIRRWKILRGDNVMITRGKDKGETGIIKRVICSQNRVIVEGKNLVKKHIK-QGQGHKGGI 67

Query: 125 LKVEGPIHSSNLMLYSKEKNVASRVGHKVLDNGKSV 160
             VE P+H+SN+ + +    +A R+  K L++G  V
Sbjct: 68  FTVEDPLHASNVQVLNPVTGLA-RLELKYLEDGTKV 102


>Glyma18g14560.1 
          Length = 138

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 7/96 (7%)

Query: 74  GDTVKIISGHEKGKIGEVVRLFKHNSTVIVKDMNLKTKHVKSKEEGEPGQILKVEGPIHS 133
           GD V I    +KG+ G + R+ +  + VIVK      KH+K + +G  G I  VE P+H+
Sbjct: 18  GDNVMITRDIDKGETGIIKRVIRSQNYVIVK------KHIK-QGKGHEGGIFTVEAPLHA 70

Query: 134 SNLMLYSKEKNVASRVGHKVLDNGKSVRYLIKTGEI 169
           SN+ +         +VG K L++G  VR     GE+
Sbjct: 71  SNVQVLDPVIGYPCKVGVKYLEDGTKVRVSRGIGEL 106