Miyakogusa Predicted Gene

Lj0g3v0272159.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0272159.1 tr|I0Z5L3|I0Z5L3_9CHLO NAF1-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,37.25,1e-17,seg,NULL; Translation proteins,Translation
elongation/initiation factor/Ribosomal, beta-barrel;
Gar1,gene.g21137.t1.1
         (193 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma12g11810.1                                                       196   2e-50
Glyma06g45170.1                                                       167   9e-42

>Glyma12g11810.1 
          Length = 401

 Score =  196 bits (497), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/155 (63%), Positives = 116/155 (74%), Gaps = 6/155 (3%)

Query: 3   KNDDELEVLPWVPPVNVTLGPHHQMLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTE 62
           ++ +EL+ LP VPPV+VTL PHHQ LPVG+V SILGAQVIVEGVEKH PLNEGSILW+TE
Sbjct: 23  RSKNELQNLPPVPPVDVTLEPHHQTLPVGIVTSILGAQVIVEGVEKHGPLNEGSILWLTE 82

Query: 63  SRRPLGFIEEIFGPVEHPYYIVRYNSENEVPEGIRGGTLISFVPEFANHVLRDEELYKKG 122
           SR+PLG I+EIFGPV++PYY+VRYNSE+EVP GI  GTLISFVPEFA+HVL +++LY+KG
Sbjct: 83  SRKPLGLIDEIFGPVKNPYYVVRYNSESEVPTGIHEGTLISFVPEFADHVLNNKDLYRKG 142

Query: 123 YXXXXXXXX------XXXXXXXXXXYKRMQTMAKR 151
           Y                        YKRMQ   KR
Sbjct: 143 YDASGADDEELSDEMEFSDDEKEAEYKRMQKQTKR 177


>Glyma06g45170.1 
          Length = 544

 Score =  167 bits (422), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 81/132 (61%), Positives = 97/132 (73%), Gaps = 6/132 (4%)

Query: 26  QMLPVGVVMSILGAQVIVEGVEKHDPLNEGSILWMTESRRPLGFIEEIFGPVEHPYYIVR 85
           +  PVG+VMS LGAQVIVEGVEKHDPLNEGSILW+TES++PLG I+EIFGPV++PYY+VR
Sbjct: 188 KRCPVGIVMSTLGAQVIVEGVEKHDPLNEGSILWLTESQKPLGLIDEIFGPVKNPYYVVR 247

Query: 86  YNSENEVPEGIRGGTLISFVPEFANHVLRDEELYKKGYXXXXXXXX------XXXXXXXX 139
           YNSE+EVP GI  GTLISFVPEFA+HV+ +++LY+KGY                      
Sbjct: 248 YNSESEVPTGINEGTLISFVPEFADHVINNKDLYRKGYDASGADDEELSDEMEFSDDEKE 307

Query: 140 XXYKRMQTMAKR 151
             YKRMQ   KR
Sbjct: 308 AEYKRMQKQTKR 319