Miyakogusa Predicted Gene

Lj0g3v0270299.2
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0270299.2 tr|Q9AXJ3|Q9AXJ3_MANES RNA polymerase I, II and
III subunit RPB8 (Fragment) OS=Manihot esculenta
PE=,66.13,7e-19,DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT
RPABC3,NULL; DNA-DIRECTED RNA POLYMERASES I, II,,CUFF.17875.2
         (98 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma02g26790.5                                                       174   2e-44
Glyma02g26790.4                                                       174   2e-44
Glyma02g26790.3                                                       174   2e-44
Glyma02g26790.1                                                       174   2e-44
Glyma02g26790.6                                                       174   2e-44
Glyma09g15750.2                                                       173   4e-44
Glyma09g15750.1                                                       173   4e-44
Glyma02g26790.2                                                       114   3e-26
Glyma15g42430.1                                                        89   8e-19
Glyma08g15860.1                                                        88   2e-18

>Glyma02g26790.5 
          Length = 145

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/94 (87%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma02g26790.4 
          Length = 145

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/94 (87%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma02g26790.3 
          Length = 145

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/94 (87%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma02g26790.1 
          Length = 145

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/94 (87%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma02g26790.6 
          Length = 124

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 82/94 (87%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV T
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEIYPLKVGQKFALVLVST 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma09g15750.2 
          Length = 145

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV +
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEVYPLKVGQKFALVLVSS 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma09g15750.1 
          Length = 145

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 81/94 (86%), Positives = 90/94 (95%)

Query: 5  LFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALLLVPT 64
          LF+DIFRVEKLNPDDKKLF+KVTRIEARSE+FDMFMHLDINSE+YPLKVGQKFAL+LV +
Sbjct: 6  LFEDIFRVEKLNPDDKKLFDKVTRIEARSEKFDMFMHLDINSEVYPLKVGQKFALVLVSS 65

Query: 65 LNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLYK 98
          LNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY+
Sbjct: 66 LNPDGTPDTGYYTQISRQSLANNFEYVMYGKLYR 99


>Glyma02g26790.2 
          Length = 107

 Score =  114 bits (284), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/61 (85%), Positives = 57/61 (93%)

Query: 38 MFMHLDINSELYPLKVGQKFALLLVPTLNPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          MFMHLDINSE+YPLKVGQKFAL+LV TLNPDGTPDTGYY   +RQSLA+NFEYVMYGKLY
Sbjct: 1  MFMHLDINSEIYPLKVGQKFALVLVSTLNPDGTPDTGYYTQISRQSLANNFEYVMYGKLY 60

Query: 98 K 98
          +
Sbjct: 61 R 61


>Glyma15g42430.1 
          Length = 145

 Score = 89.4 bits (220), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 69/100 (69%), Gaps = 15/100 (15%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LF+DIF+VEK++PD KK ++KV+RI ARSE+ DM+M LDIN+E+YP+   ++F + 
Sbjct: 1  MSELLFNDIFKVEKVDPDGKK-YDKVSRIVARSEKCDMYMLLDINTEIYPMGEKERFLMA 59

Query: 61 LVPTL---NPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+L     DG+            S+ D FEY+M+G+LY
Sbjct: 60 LSPSLVLNTKDGSV-----------SIQDKFEYIMHGRLY 88


>Glyma08g15860.1 
          Length = 160

 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 68/100 (68%), Gaps = 15/100 (15%)

Query: 1  MVEILFDDIFRVEKLNPDDKKLFEKVTRIEARSERFDMFMHLDINSELYPLKVGQKFALL 60
          M E+LFDDIF+VEK++PD KK ++KV+RI ARSE+ DM M LD+N+E+YP+   ++F + 
Sbjct: 1  MSELLFDDIFKVEKVDPDGKK-YDKVSRIVARSEKCDMNMLLDVNTEIYPMGEKERFLMA 59

Query: 61 LVPTL---NPDGTPDTGYYVPGNRQSLADNFEYVMYGKLY 97
          L P+L     DG+            S+ D FEY+M+G+LY
Sbjct: 60 LSPSLVLNTKDGSV-----------SIQDKFEYIMHGRLY 88