Miyakogusa Predicted Gene

Lj0g3v0268209.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268209.1 tr|B9H0C6|B9H0C6_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_800704 PE=4
SV=1,76.69,0,NMD3,NMD3; SUBFAMILY NOT NAMED,NULL; NONSENSE-MEDIATED
MRNA DECAY PROTEIN 3,NULL; seg,NULL,CUFF.17706.1
         (374 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma11g33380.1                                                       535   e-152
Glyma18g04850.1                                                       530   e-150
Glyma17g08880.1                                                       491   e-139

>Glyma11g33380.1 
          Length = 510

 Score =  535 bits (1377), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 257/335 (76%), Positives = 289/335 (86%), Gaps = 4/335 (1%)

Query: 1   MCDSCTRVAANPDQWIAAVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFF 60
           MC+SC+RV ANPDQW+AAVQLRQHVSHRRTFFYLEQLILKHGAAA AIRIKQM +GIDFF
Sbjct: 150 MCESCSRVQANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAATAIRIKQMEQGIDFF 209

Query: 61  FSNKNHGEEFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICL 120
           FSN++HG +FV+F+ KV+P+RS  D  QLVSHD KSN YNYK+TFSVEISPICREDLICL
Sbjct: 210 FSNRSHGVKFVEFIGKVSPVRSRHDK-QLVSHDPKSNNYNYKYTFSVEISPICREDLICL 268

Query: 121 PHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWR-AFKSLLTSRQLXXXX 179
           P  VA+SLGN+GPLVICTKVTN+I LLDPFTLRHCF+DAD+YWR +FKSLLTSRQL    
Sbjct: 269 PPRVAVSLGNIGPLVICTKVTNSIALLDPFTLRHCFIDADQYWRTSFKSLLTSRQLVEYI 328

Query: 180 XXXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYD 239
                          GGTKY LA A+VARVSDFGKNDT F+I+THLGHLLNPGDYALGYD
Sbjct: 329 VLDVETVSSEVTI--GGTKYRLADAQVARVSDFGKNDTIFNIKTHLGHLLNPGDYALGYD 386

Query: 240 LHGANCNDIELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPD 299
           L+GAN ND+ELDK+KG +PEAIL+KKSYEEK  K+RGKPRSWKLKSL MEVDDKGR D D
Sbjct: 387 LYGANSNDMELDKYKGHIPEAILIKKSYEEKHQKKRGKPRSWKLKSLEMEVDDKGRVDED 446

Query: 300 KMNSEYEQFLKDLEENPDLRFNISLYENKEYQPSD 334
           KM SEYEQF++DLEENP++RFNISLY NKEY+PSD
Sbjct: 447 KMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPSD 481


>Glyma18g04850.1 
          Length = 504

 Score =  530 bits (1364), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 255/335 (76%), Positives = 286/335 (85%), Gaps = 4/335 (1%)

Query: 1   MCDSCTRVAANPDQWIAAVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFF 60
           MC+SC+RV ANPDQW+A+VQLRQHVSHRRTFFYLEQLILKHGAAA AIRIKQM +GIDFF
Sbjct: 144 MCESCSRVQANPDQWVASVQLRQHVSHRRTFFYLEQLILKHGAAATAIRIKQMEQGIDFF 203

Query: 61  FSNKNHGEEFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICL 120
           FSN++HG +FV+F+ KVAP+RS  D  QLVSHD KSN YNYK+TFSVEISPICREDLICL
Sbjct: 204 FSNRSHGVKFVEFIGKVAPVRSRHDK-QLVSHDPKSNNYNYKYTFSVEISPICREDLICL 262

Query: 121 PHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXX 179
           P  VA  LGN+GPLVICTKVT++I LLDPFTLRHCF+DAD+YWRA FKSLLTSRQL    
Sbjct: 263 PPRVAAGLGNIGPLVICTKVTSSIALLDPFTLRHCFIDADQYWRASFKSLLTSRQLVEYI 322

Query: 180 XXXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYD 239
                          GGTKY LA A+VARVSDFGKNDT F+I+THLGHLLNPGDYALGYD
Sbjct: 323 VLDVETVSSEVTI--GGTKYRLADAQVARVSDFGKNDTIFNIKTHLGHLLNPGDYALGYD 380

Query: 240 LHGANCNDIELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPD 299
           L+GAN ND+E DK+KG +PEAIL+KKSYEEK  K+RGKPRSWKLKSL MEVDDKGR D D
Sbjct: 381 LYGANSNDMEFDKYKGHIPEAILIKKSYEEKHQKKRGKPRSWKLKSLEMEVDDKGRVDQD 440

Query: 300 KMNSEYEQFLKDLEENPDLRFNISLYENKEYQPSD 334
           KM SEYEQF++DLEENP++RFNISLY NKEY+PSD
Sbjct: 441 KMVSEYEQFIQDLEENPEMRFNISLYRNKEYKPSD 475


>Glyma17g08880.1 
          Length = 410

 Score =  491 bits (1263), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 243/326 (74%), Positives = 269/326 (82%), Gaps = 14/326 (4%)

Query: 1   MCDSCTRVAANPDQWIAAVQLRQHVSHRRTFFYLEQLILKHGAAARAIRIKQMHEGIDFF 60
           MC+SC+RV ANPDQW+AAVQLRQHVSHRRTFFYLEQLILKHGAAA AIRIKQM +GIDFF
Sbjct: 98  MCESCSRVQANPDQWVAAVQLRQHVSHRRTFFYLEQLILKHGAAATAIRIKQMEQGIDFF 157

Query: 61  FSNKNHGEEFVKFLRKVAPIRSNGDNMQLVSHDTKSNEYNYKFTFSVEISPICREDLICL 120
           FSN+          RKVAP+RS+ D  QLVSHD KSN YNYK+TFSVEISPICREDLIC+
Sbjct: 158 FSNR----------RKVAPLRSHHDK-QLVSHDPKSNNYNYKYTFSVEISPICREDLICV 206

Query: 121 PHNVALSLGNLGPLVICTKVTNNIVLLDPFTLRHCFLDADKYWRA-FKSLLTSRQLXXXX 179
           P  VA  LGN+GPLVICTKVTN+I LLDPFTLRHCF+DAD+YWRA FKSLLTSRQL    
Sbjct: 207 PPRVAAGLGNIGPLVICTKVTNSIALLDPFTLRHCFIDADQYWRASFKSLLTSRQLVEYI 266

Query: 180 XXXXXXXXXXXXXXXGGTKYVLALAEVARVSDFGKNDTRFSIRTHLGHLLNPGDYALGYD 239
                          G TKY LA A+VAR+SDFGKNDT F+I+THLGHLLNPGDYALGYD
Sbjct: 267 VLDVETVSSEVTI--GDTKYRLADAQVARISDFGKNDTIFNIKTHLGHLLNPGDYALGYD 324

Query: 240 LHGANCNDIELDKFKGPLPEAILVKKSYEEKRLKQRGKPRSWKLKSLNMEVDDKGRTDPD 299
           L GAN ND+ELDK+KG +PEAIL+KKSYEEK  K+RGKPRSWKLKSL MEVDDKGR D  
Sbjct: 325 LCGANSNDMELDKYKGHIPEAILIKKSYEEKHQKKRGKPRSWKLKSLEMEVDDKGRVDQG 384

Query: 300 KMNSEYEQFLKDLEENPDLRFNISLY 325
           KM SEYEQF++DLEENP++RFNISLY
Sbjct: 385 KMVSEYEQFIQDLEENPEMRFNISLY 410