Miyakogusa Predicted Gene

Lj0g3v0268089.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0268089.1 tr|A9RUT5|A9RUT5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_70836
,36.09,4e-17,PRA1,Prenylated rab acceptor PRA1; seg,NULL,CUFF.17701.1
         (198 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g34890.1                                                       265   3e-71
Glyma13g34890.2                                                       191   3e-49
Glyma06g43030.1                                                        60   1e-09

>Glyma13g34890.1 
          Length = 222

 Score =  265 bits (676), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 136/171 (79%), Positives = 148/171 (86%)

Query: 28  LFSRLVTLLSLFTLNPFSKLTAEDFAGDTPSWSRSFIGFCGSYSFPSSPSQARFRVLENV 87
           LFSRL+T LSLFTLN F+KL A+DFA DTPSWSRSF  F  SYSFPSSPSQAR RV ENV
Sbjct: 52  LFSRLLTFLSLFTLNAFAKLAADDFAADTPSWSRSFFAFSDSYSFPSSPSQARLRVQENV 111

Query: 88  KRYARNYAFLFIVFFACALYKMPLALVGLISCLALWDFFKYCSDRWGLDQYPLIRQCLLR 147
           KRYARNYA+LFIVFFAC LYKMP+ALVGL+ CLALWDFFK+CS RWGL+QYPL RQ L+R
Sbjct: 112 KRYARNYAYLFIVFFACTLYKMPVALVGLVLCLALWDFFKFCSHRWGLEQYPLTRQILIR 171

Query: 148 IAQCATAVILIFSNVQMALFCALSVGYAGVILHAAFRKLTPVKPPSSSRSR 198
           + QCATAVILIFSNVQMALFCA+ V Y G+ILHA FRKLTPVK PS SR R
Sbjct: 172 VVQCATAVILIFSNVQMALFCAICVSYVGMILHAGFRKLTPVKQPSVSRGR 222


>Glyma13g34890.2 
          Length = 193

 Score =  191 bits (486), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 110/131 (83%)

Query: 28  LFSRLVTLLSLFTLNPFSKLTAEDFAGDTPSWSRSFIGFCGSYSFPSSPSQARFRVLENV 87
           LFSRL+T LSLFTLN F+KL A+DFA DTPSWSRSF  F  SYSFPSSPSQAR RV ENV
Sbjct: 52  LFSRLLTFLSLFTLNAFAKLAADDFAADTPSWSRSFFAFSDSYSFPSSPSQARLRVQENV 111

Query: 88  KRYARNYAFLFIVFFACALYKMPLALVGLISCLALWDFFKYCSDRWGLDQYPLIRQCLLR 147
           KRYARNYA+LFIVFFAC LYKMP+ALVGL+ CLALWDFFK+CS RWGL+QYPL RQ L+R
Sbjct: 112 KRYARNYAYLFIVFFACTLYKMPVALVGLVLCLALWDFFKFCSHRWGLEQYPLTRQILIR 171

Query: 148 IAQCATAVILI 158
           + QC   +  I
Sbjct: 172 VVQCGEQLFPI 182


>Glyma06g43030.1 
          Length = 94

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 42/50 (84%)

Query: 28 LFSRLVTLLSLFTLNPFSKLTAEDFAGDTPSWSRSFIGFCGSYSFPSSPS 77
          LFSRL+T LSLFTLN F+KL A+DFA DTPSWSRSF  F  SYSFPSSPS
Sbjct: 45 LFSRLLTFLSLFTLNAFAKLAADDFAVDTPSWSRSFFAFFNSYSFPSSPS 94