Miyakogusa Predicted Gene

Lj0g3v0266349.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0266349.3 Non Chatacterized Hit- tr|D8UGY1|D8UGY1_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,48.94,0.0003,alpha/beta knot,NULL; SUBFAMILY NOT NAMED,NULL; RNA
METHYLTRANSFERASE,NULL; seg,NULL; SpoU_methylase,CUFF.17563.3
         (187 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma08g37630.1                                                       286   1e-77

>Glyma08g37630.1 
          Length = 324

 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 138/173 (79%), Positives = 144/173 (83%)

Query: 14  FNLDGDQNNCYKWFPSAHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEK 73
           F++D  Q NC KWFPS HRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEK
Sbjct: 151 FSVDDHQKNCLKWFPSVHRILVLDGIQDPGNLGTLLRSAVAFRWDGVFLLPGCCDPFNEK 210

Query: 74  ALRASRGASFQLPVVSGNWNHLESLKETFQMKLLAGHPEHEGLDKRVCLLSPSFCDSLSD 133
           ALRASRGASFQLPVVSG+WNHLESLK+ FQM+ LAGHPEHEGL K V  LSPSFCDSLSD
Sbjct: 211 ALRASRGASFQLPVVSGSWNHLESLKKEFQMRFLAGHPEHEGLVKPVSSLSPSFCDSLSD 270

Query: 134 TPLCXXXXXXXXXXXXXXXHACELVSIAMAGEYESLNVSVAGGIFLYMLQPEN 186
           TPLC                 CELVSIAM GEYESLNVSVAGGIFLYMLQP+N
Sbjct: 271 TPLCLVLGSEGSGLSEKSLQTCELVSIAMTGEYESLNVSVAGGIFLYMLQPKN 323