Miyakogusa Predicted Gene

Lj0g3v0264999.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264999.1 tr|B9HZK5|B9HZK5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_771071 PE=4
SV=1,34.64,0.0000000002,FBD,FBD; domain in FBox and BRCT domain
containing pl,FBD,CUFF.17463.1
         (169 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma20g28060.1                                                       214   4e-56
Glyma08g46320.1                                                        50   8e-07
Glyma08g46590.2                                                        49   3e-06

>Glyma20g28060.1 
          Length = 421

 Score =  214 bits (544), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 126/168 (75%)

Query: 2   FLRGISCMKHLILTSFAFEGLTYSKELYACFPVLYKLECLAFLPTGKAINFGCGTMTNFL 61
            LRGISC K L+LT +AFE LTYS+ L AC PVLYK+  L FL  G AINFGC  +  FL
Sbjct: 254 LLRGISCAKELLLTPYAFEVLTYSEYLCACMPVLYKVTYLGFLSPGTAINFGCRALAKFL 313

Query: 62  EKLPCLELLIFQSGIDLSGNHKEGNWTFDPVPSCFSSHLKTIKICKFRGTAGELLVVKSL 121
           EKLPCLELL+FQSG+ LSGNH+EG+W  DPVPSCFS +LK I+I +F GT GEL VVKSL
Sbjct: 314 EKLPCLELLVFQSGVCLSGNHEEGSWILDPVPSCFSRYLKLIRISQFCGTDGELQVVKSL 373

Query: 122 LKSAEKLREMDLKCLHDEFVGGSARERSVLNELRMLPRASINCKIIFS 169
           LK AE L +MD+ C H++F  G ARER VL +L+MLPRAS  C I  S
Sbjct: 374 LKHAEILLQMDIICHHEKFSDGLARERDVLEKLQMLPRASTYCTINIS 421


>Glyma08g46320.1 
          Length = 379

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 3/85 (3%)

Query: 87  WTFDP-VPSCFSSHLKTIKICKFRGTAGELLVVKSLLKSAEKLREMDL--KCLHDEFVGG 143
           WTF   VP C SS L+   I  ++G   EL   K +L+++  L+ M +  K + + +   
Sbjct: 293 WTFPQIVPECISSKLRRCTIMNYKGKKYELQFAKYILQNSRALQSMTIHNKRVRNTYFAN 352

Query: 144 SARERSVLNELRMLPRASINCKIIF 168
              +  +L EL M P++S  CKI+F
Sbjct: 353 PQDKIRILQELAMCPKSSTTCKILF 377


>Glyma08g46590.2 
          Length = 380

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 58/111 (52%), Gaps = 8/111 (7%)

Query: 61  LEKLPCLELLIFQSG-IDLSGNHKEG-NWTFD-PVPSCFSSHLKTIKICKFRGTAGELLV 117
           +++ P L++L    G ID++    EG +W F   VPS  S HLKT  I  + G+ GEL  
Sbjct: 271 IQRCPNLQILDIDMGSIDMTTRDDEGADWPFPRSVPSSISLHLKTCFIRCYGGSKGELRF 330

Query: 118 VKSLLKSAEKLREMDLKCLHDEFVGGSARERSVLNELRMLPRASINCKIIF 168
            + ++++A  LR M +            ++ ++L +L + PR S  CK+ F
Sbjct: 331 ARYIMRNARHLRTMKIST-----YASRQQKFNMLKKLSLCPRRSRICKLSF 376