Miyakogusa Predicted Gene

Lj0g3v0264869.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0264869.2 tr|A2Q3V3|A2Q3V3_MEDTR C-5 cytosine-specific DNA
methylase; Vacuolar protein sorting-associated prot,78.94,0,GB DEF:
VPS13-LIKE PROTEIN,NULL; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN
(VPS13),Vacuolar protei,CUFF.17733.2
         (1277 letters)

Database: Glyma1.pep 
           75,778 sequences; 25,431,882 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Glyma13g24310.1                                                      1987   0.0  
Glyma13g24310.3                                                        85   5e-16
Glyma13g24310.2                                                        85   5e-16

>Glyma13g24310.1 
          Length = 2549

 Score = 1987 bits (5147), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 994/1282 (77%), Positives = 1085/1282 (84%), Gaps = 45/1282 (3%)

Query: 1    MDENDEQRLPHYRHSNSSDSLNEQRSSGFTHHYITVQLDGASMPSDPISMDLVGLTCFEV 60
            MDEN EQ+L  +R S+SSDSLNE RS+GF HHYITVQL+G S  S PISMDLVGLTCFEV
Sbjct: 1072 MDENAEQQLSRFRPSHSSDSLNEPRSNGFAHHYITVQLEGTSRSSGPISMDLVGLTCFEV 1131

Query: 61   NFSKTYDQNGQGGRMNSGATFVVPVVFDVSMLRYSKLIRIYSTVVLLNATSTPLELRFDI 120
            NFSKTY+   +   +N+  TFVVPVVFDVS+LR+SKLIRIYSTVVLLNATSTP+ELRFDI
Sbjct: 1132 NFSKTYNDTAEDNSLNTSPTFVVPVVFDVSVLRHSKLIRIYSTVVLLNATSTPVELRFDI 1191

Query: 121  PFGVSPTILDXXXXXXXXXXXXXXAEAGCVRWRPTGNSYLWSEAHNLSNLLSITGDVGSL 180
            PF VSPT+L               AEAGCVRWRP GNSYLWSEAHNL+NLLS+   VG+ 
Sbjct: 1192 PFSVSPTLLGPIQPGQQFPLPLHLAEAGCVRWRPMGNSYLWSEAHNLTNLLSVNSKVGNF 1251

Query: 181  KSFMCYPSLPSSHPFRCCMXXXXXXXXXXGRLKNNVSTDDAKR-YIHHLILSPPLVVYNY 239
            KSFMCYPS PSS PFRCC+          G LKNNV  +D K+ YIHHLILS PL++ NY
Sbjct: 1252 KSFMCYPSHPSSRPFRCCLSVKNISLTSSGWLKNNVPANDVKKHYIHHLILSAPLIINNY 1311

Query: 240  LPEEMLLISESGGVDHTLKVSEVDTSVYHIDPSHDLGLKICIDGFKCSDFKFPRLETFCS 299
            LP+E+LLISESGGV HT++VSEV TSVYHIDPSHDLGL+ICIDGFKCS+FKFPRLETFC+
Sbjct: 1312 LPKEILLISESGGVGHTVRVSEVGTSVYHIDPSHDLGLEICIDGFKCSNFKFPRLETFCT 1371

Query: 300  MAKFSETKFSFSETLILEPINSNGPVYVTVEKVMDAYSGSRELIIFVPFILYNCMGFPLC 359
            MAKF+E KFSFSETLI EP +SNGPVYVTVEKVMDAYSGSRELI FVPFILYNCMGFPLC
Sbjct: 1372 MAKFTEPKFSFSETLIFEPNSSNGPVYVTVEKVMDAYSGSRELIFFVPFILYNCMGFPLC 1431

Query: 360  VTETTGEANERGFVIPSYDDLGEKETFSYKKDGLSLLISNHELRADVPCTPMNHLKNHTI 419
            VTE TGE NER FVIPSY D GE ET SYKKDGLSLL SN EL  +VP  P +++KNHTI
Sbjct: 1432 VTEATGETNEREFVIPSYFDGGENETLSYKKDGLSLLTSNRELPVEVPHNPRSYMKNHTI 1491

Query: 420  SCREDGGPNFVSYKRNSLLFGNYHENLGRQQSKSDSVER------LASTMRSSSQSTWKD 473
            S REDG  N +         GNYH+NLGRQ SK DS+ R      L S + S  QSTWKD
Sbjct: 1492 SYREDGSANSI---------GNYHKNLGRQHSKIDSIFRNSSSGKLKSMLSSKIQSTWKD 1542

Query: 474  SGPCNNEPERVWPCMYSPSPNSSVNDVFVKVSRCFPDDVRKQLPYSLWSNPFYLLPPSGS 533
            SG  N+E E+V PC+YSPSP+SSVND FVKV RCF +D ++QLPYSLWSNPF LLPPSGS
Sbjct: 1543 SGSGNHEREKVQPCIYSPSPDSSVNDAFVKVCRCFSEDAKEQLPYSLWSNPFSLLPPSGS 1602

Query: 534  STIYVPQLSSNSAFILAVTSSSVAE-YAGRTHAITFQPRYVISNACSKEISYKQKGTDIM 592
            STI VPQL+SNSAFILA+T +SV E YAGR +AITFQPRYVISNACSKEISYKQKGTD +
Sbjct: 1603 STILVPQLTSNSAFILAMTCNSVTEQYAGRINAITFQPRYVISNACSKEISYKQKGTDAV 1662

Query: 593  FYLGVGEHAHLHWTDTARELLVSICYNESGWQWSGSFLPDHLGDTLLKMRNFVSGTSNMI 652
            FYLG+G+H HLHWTDT RELLVSICYNESGWQWSGSFLPDHLGDT LKMRN+V GTSNMI
Sbjct: 1663 FYLGIGKHDHLHWTDTTRELLVSICYNESGWQWSGSFLPDHLGDTQLKMRNYVFGTSNMI 1722

Query: 653  RVEVQNADISMGDEKVIGSIKGNSGTNLILLSDDGTGYMPYRIDNFSKERLRIYQQKCEM 712
            RVEVQNADISMGDEK++G+IKGNSGTNLILLSDD TGYMPYRIDNFSKERLRIYQQ+CEM
Sbjct: 1723 RVEVQNADISMGDEKIVGNIKGNSGTNLILLSDDDTGYMPYRIDNFSKERLRIYQQRCEM 1782

Query: 713  FDAVIHSYSSYPYTWDEPCYPCRLIVEVPGERVLGSYALDDVKEYMPVHLPSTSEKPERT 772
            FD VIHSY+S PYTWDEPCYP RLIVEVPGERVLGSY LDDVKEY+PV+LPSTSEKP RT
Sbjct: 1783 FDTVIHSYTSCPYTWDEPCYPRRLIVEVPGERVLGSYDLDDVKEYVPVYLPSTSEKPART 1842

Query: 773  FFLSVHAEGATKVLSVLDSNYHIFNDVKNSSVQHAAEKRVYDHSQVRPAEYKEKISICIQ 832
            F+LSVHAEGATKVLSVLDSNYHIFNDVK SSV    EKR+ DHS VR +EYKEKISIC+ 
Sbjct: 1843 FYLSVHAEGATKVLSVLDSNYHIFNDVKKSSVPLPTEKRLCDHSLVRASEYKEKISICVP 1902

Query: 833  YIGISLINSYPQELLFACIKDIEINLLQSLDRQRLSMMISFIQIDNQLHSTPYPVLLSFN 892
            YIGISLI+SYPQELLFACIKD+E+NLLQSLDRQ LS++I FIQIDNQL STPYPV+LSF+
Sbjct: 1903 YIGISLIDSYPQELLFACIKDVEMNLLQSLDRQCLSLLILFIQIDNQLRSTPYPVMLSFD 1962

Query: 893  NGYRSCQVDNTKSRDDVMRTSIEKLNQKSFGSSSSNPVMCLEISKWRKKDISFISFEYIK 952
            +GYRS  VD+ KSRDD  RT IE LNQ    SSSS PV CLEISKWRKKDISFISFEYIK
Sbjct: 1963 SGYRSGHVDHMKSRDDGTRTRIESLNQM---SSSSVPVFCLEISKWRKKDISFISFEYIK 2019

Query: 953  MRIADFHLEIEQGVILSLFEFFTNFSSGQQFGIVPSSNHYDGVSLKDSFSFVHTSENFRL 1012
            +R+ DF LEIEQ VILSLFEFFTN SSG Q+GI+PSS+ YDGV                 
Sbjct: 2020 LRMEDFRLEIEQEVILSLFEFFTNVSSGMQYGIMPSSDPYDGV----------------- 2062

Query: 1013 SADQRPLRIAPMFTGKSNRIASLPSVVPIGAPWQEIYLLARTKKKIYIEMLELAPIQLTL 1072
                    I+PMF  KS RIASLPSVVPIGAPWQEI+LLART+KKIYIEMLEL+PI+LTL
Sbjct: 2063 --------ISPMFDEKSKRIASLPSVVPIGAPWQEIFLLARTQKKIYIEMLELSPIKLTL 2114

Query: 1073 SFSSAPWMLHNRILTSKEFLIHRGLMALADVEGAHIYLKDLTIAHHMASWESIQQILIRH 1132
            SFSSAPWML NRILTSKEFLIHRGLMALADVEGAHIYLKDL IAHHMASWESIQ+ILIRH
Sbjct: 2115 SFSSAPWMLRNRILTSKEFLIHRGLMALADVEGAHIYLKDLIIAHHMASWESIQEILIRH 2174

Query: 1133 YNRQLLHETYKLFGSAGFIGNPLGFARSIGHGIRDFLSVPAKSIMQSPTGLIMGMAQGTT 1192
            YNRQLLHETYKLFGSAG IGNPLGFARS+G GIRDFLSVPAKSI++SPTGLIMGMAQGTT
Sbjct: 2175 YNRQLLHETYKLFGSAGVIGNPLGFARSMGLGIRDFLSVPAKSIVRSPTGLIMGMAQGTT 2234

Query: 1193 SLLSNTLYAISDATSQFSKAARKGIVAFTYDDQAVSRVEKHQATVSSDSKGVINEVLEGL 1252
            SLLSNT+YAISDA SQFSKAARKGIVAFTYDDQAVSR+EKHQA V+SDSKGVINEVLEGL
Sbjct: 2235 SLLSNTVYAISDAASQFSKAARKGIVAFTYDDQAVSRMEKHQAIVASDSKGVINEVLEGL 2294

Query: 1253 TGLLQSPIRGAERHGLPGVLSG 1274
            TGLLQ P+ GAERHGLPGVLSG
Sbjct: 2295 TGLLQFPVTGAERHGLPGVLSG 2316


>Glyma13g24310.3 
          Length = 272

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/45 (86%), Positives = 42/45 (93%)

Query: 1230 VEKHQATVSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSG 1274
            +EKHQA V+SDSKGVINEVLEGLTGLLQ P+ GAERHGLPGVLSG
Sbjct: 1    MEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSG 45


>Glyma13g24310.2 
          Length = 278

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 39/45 (86%), Positives = 42/45 (93%)

Query: 1230 VEKHQATVSSDSKGVINEVLEGLTGLLQSPIRGAERHGLPGVLSG 1274
            +EKHQA V+SDSKGVINEVLEGLTGLLQ P+ GAERHGLPGVLSG
Sbjct: 1    MEKHQAIVASDSKGVINEVLEGLTGLLQFPVTGAERHGLPGVLSG 45